Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2428 172 6e-38 seq631 163 3e-35 >seq2428 Length=1050118 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || |||||||| || || || ||||||||| | | Sbjct 346762 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 346703 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| ||||||| || || ||||||||||| || ||||| || || || Sbjct 346702 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 346643 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || || |||| ||| || || | ||||| || Sbjct 346642 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCCGACTACAA 346583 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || |||| || | ||||| Sbjct 346582 CATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTCAGGGGTGG 346535 >seq631 Length=15915561 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || |||||||| ||||||||||| || || || ||||||||| | | Sbjct 10046385 AATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 10046326 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| || | ||||| || || |||||||||||||| || || || || || Sbjct 10046325 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCA 10046266 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 10046265 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAA 10046206 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || | || ||||||| | ||||| Sbjct 10046205 CATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTCAGAGGTGG 10046158 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||||||| | | Sbjct 10046156 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 10046097 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || |||||||||||||| || || || || ||| Sbjct 10046096 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCAG 10046037 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 10046036 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAAC 10045977 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || | || ||||||| | ||||| Sbjct 10045976 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTCAGAGGTGG 10045930 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||||||| | | Sbjct 10045928 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 10045869 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || |||||||||||||| || || || || ||| Sbjct 10045868 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCAG 10045809 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 10045808 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAAC 10045749 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || | || |||| || | ||||| Sbjct 10045748 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGCCTGAGGGGTGG 10045702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569885839551600