Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq4036 244 1e-59 seq53577 123 3e-23 seq59553 120 4e-22 >seq4036 Length=7929983 Score = 244 bits (270), Expect = 1e-59 Identities = 615/928 (66%), Gaps = 14/928 (2%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||||| ||| |||| ||||| |||||||||||||| || || ||||| |||| Sbjct 5710386 CCGCTGAGCCAGGAGGAGGAAGAGTTCCCCATCGCCTACTCCATGGTCGTCCACAACAAA 5710327 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || |||||||||||||| |||||| || | |||||||||| |||||| |||||||| || Sbjct 5710326 ATAGAGATGTTCGAGCGGCTCCTGCGGTCTCTCTACGCCCCCCAGAACGTCTACTGCATC 5710267 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||| | ||| |||||||| | | ||| || ||| |||||||| ||| Sbjct 5710266 CACATTGACGCCAAGTCCCCGGCTGCCTTCCAGGAGGCCGTGCGGGCCATCGTAGCCTGC 5710207 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 ||||| || || |||| ||| ||| | | ||||| || | ||||||| || Sbjct 5710206 TTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGG 5710147 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTAC 13970 ||||||||||||||| ||||||| ||||||| ||| || ||| | ||| Sbjct 5710146 CTGCAGGCCGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCTGTGCCATGGCGCTAC 5710087 Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030 || |||||| ||||| | || ||||| ||||||| ||| |||||| | || | Sbjct 5710086 CTCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACGAACGCCGAGATCATCCGTGTC 5710027 Query 14031 CTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCAT-GCCCAACCACAAG 14087 ||||||| ||| || |||| | ||||| || || | | | | ||| |||| Sbjct 5710026 CTGAAGGTGCTGCAGGGGCGGAACAGCATGGAGTCAGAGAAGCCCTCGGCCA---TCAAG 5709970 Query 14088 CTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGC 14147 | | | ||| | | ||| |||| || | | | ||| || | | Sbjct 5709969 CAGGAGCGCTGGCTGTACCACCACAAAGTGG-----GGAAG-TTCATCGTCCGGACAGCC 5709916 Query 14148 AGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCG 14207 | | || ||||| || | || ||||| || |||| ||||| ||| | ||| Sbjct 5709915 ACACAGAAACTGCCGCCACCCCACAACTCTCCCATGTTCACGGGCAACGCGTACATCGCG 5709856 Query 14208 GTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCAC 14267 ||||| |||| |||||| | |||| || || || ||| | | | || | | Sbjct 5709855 GTCACGCGGGCCTTCGTGCAGCACGTCTTCGAGAACCCCACGGCGCAGCAGTTCCTCGAG 5709796 Query 14268 TGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTAC 14327 ||| | ||||||| |||||||||||||||||| | ||||||||| | | | ||| | Sbjct 5709795 TGGGCCAAGGACACCTACAGCCCCGACGAGCACGTCTGGGCCACCCTCAACCGCATGCCC 5709736 Query 14328 GGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAG 14387 || ||| || | || ||| | | ||||| | | |||||||||| ||| | Sbjct 5709735 GGCGTGCCAGGCGCCATGCCCCAGAATGACAAGTTCCAGCTCTCGGACATGAACGCCCTG 5709676 Query 14388 GTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCG 14447 | | || ||||||||||| ||| ||||| || | || || || || | |||||| Sbjct 5709675 CCCCGCTTGGTCAAGTGGCAGTACCTGGAGGGTGACACCAGCAAGGGCGCGCCCTACCCG 5709616 Query 14448 CCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGG 14507 || ||| |||| ||| | |||| ||||||||| ||| |||||| || ||| Sbjct 5709615 CCCTGCACCGGCCAGCACCAGCGCGCCGTCTGCATCTACGGAGTGGGCGACCTGCCCTGG 5709556 Query 14508 CTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAGTTCGC 14566 || ||| | | ||||| || ||||||||||||||| | | |||||| ||| Sbjct 5709555 ATGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGACCCCATGGTGGACGACGCCGC 5709497 Query 14567 CGTGCGCTGTCTGGACGAGGACGTGCGC 14594 | | | ||||| || ||| || ||||| Sbjct 5709496 CATCCAGTGTCTCGAGGAGCACCTGCGC 5709469 >seq53577 Length=444 Score = 123 bits (136), Expect = 3e-23 Identities = 228/331 (69%), Gaps = 10/331 (3%) Strand=Plus/Minus Query 13729 AGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCG 13788 || |||||| || ||||| ||| | ||||| | ||| || || ||| ||||||||| Sbjct 389 AGTTCGAGACCTTTGAGCGGCTCTTCAGGGCGGTGTACATGCCCCAAAACGTCTACTGCG 330 Query 13789 TCCACGTGGACTCCAAGTC--CGGCGACGAGTTCATCCGG--GGCGTCTCGGCCATCGCC 13844 |||||||||| ||||| | |||| | | ||||| |||| | || | | Sbjct 329 TCCACGTGGATGCCAAGGCGCCGGCCCC-----CTTCCGGCAGGCGGTGCAGCGCTTGGT 275 Query 13845 AGG-TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTG 13903 || |||||||| |||| ||| ||| |||| || | ||||| || ||| | Sbjct 274 GGGCTGCTTCCCCAACGCCTTCCTCGCCTCCCGGGTGGAGCGGGTGGTCTATGGCGGCAT 215 Query 13904 GAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTG 13963 ||| ||| ||| |||||| ||||||| |||||| ||||| |||| || Sbjct 214 CTCCCGCCTGCGGGCTGACCTCCACTGCATGAGAGACCTGCTGGCCTCGGCCGTGCCCTG 155 Query 13964 GAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGT 14023 | | |||||||||||| ||||| ||||||||| | |||||||||| ||||||||| Sbjct 154 GCGCTACCTGCTCAACACCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGT 95 Query 14024 GCGGGCGCTGAAGGCCCTGGGCGGCAAGAAC 14054 ||| |||||||| | | || || |||||| Sbjct 94 CCGGCTGCTGAAGGGCTTCGGGGGGAAGAAC 64 >seq59553 Length=16526472 Score = 120 bits (132), Expect = 4e-22 Identities = 227/331 (69%), Gaps = 10/331 (3%) Strand=Plus/Minus Query 13729 AGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCG 13788 || |||||| || ||||| ||| | ||||| | ||| || || ||| ||||||||| Sbjct 8466385 AGTTCGAGACCTTTGAGCGGCTCTTCAGGGCGGTGTACATGCCCCAAAACGTCTACTGCG 8466326 Query 13789 TCCACGTGGACTCCAAGTC--CGGCGACGAGTTCATCCGG--GGCGTCTCGGCCATCGCC 13844 |||||||||| ||||| | |||| | | ||||| |||| | || | | Sbjct 8466325 TCCACGTGGATGCCAAGGCGCCGGCCCC-----CTTCCGGCAGGCGGTGCAGCGCTTGGT 8466271 Query 13845 AGG-TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTG 13903 || |||||||| |||| ||| ||| |||| || | ||||| || ||| | Sbjct 8466270 GGGCTGCTTCCCCAACGCCTTCCTCGCCTCCCGGGTGGAGCGGGTGGTCTATGGCGGCAT 8466211 Query 13904 GAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTG 13963 ||| ||| ||| |||||| ||||||| |||||| ||||| |||| || Sbjct 8466210 CTCCCGCCTGCGGGCTGACCTCCACTGCATGAGAGACCTGCTGGCCTCGGCCGTGCCCTG 8466151 Query 13964 GAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGT 14023 | | |||||||||||| ||||| || |||||| | |||||||||| ||||||||| Sbjct 8466150 GCGCTACCTGCTCAACACCTGCGGCCAGGGCTTCCCCTTGAAGACCAACCGGGAGATCGT 8466091 Query 14024 GCGGGCGCTGAAGGCCCTGGGCGGCAAGAAC 14054 ||| |||||||| | | || || |||||| Sbjct 8466090 CCGGCTGCTGAAGGGCTTCGGGGGGAAGAAC 8466060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658248809836800