Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq631 120 3e-22 >seq631 Length=15915561 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || || || || Sbjct 10046157 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 10046098 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| ||||| || || || ||||| || || || || |||||||| Sbjct 10046097 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCA 10046038 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| || |||| || | ||| | ||||| ||||| Sbjct 10046037 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAA 10045978 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | || ||||| ||||| | | |||||||| Sbjct 10045977 CATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTCAGAGGTGGCAT 10045927 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || || || || Sbjct 10045929 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 10045870 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| ||||| || || || ||||| || || || || |||||||| Sbjct 10045869 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCA 10045810 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| || |||| || | ||| | ||||| ||||| Sbjct 10045809 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAA 10045750 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||| || ||| | || ||||| |||| || ||||||| Sbjct 10045749 CATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGCCTGAGGGGTGG 10045702 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || || || || | Sbjct 10046384 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 10046325 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || || || ||||| || || || || |||||||| Sbjct 10046324 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCAG 10046265 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| ||||| || |||| || | ||| | ||||| |||||| Sbjct 10046264 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAAC 10046205 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || ||| | || ||||| ||||| | | |||||||| Sbjct 10046204 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTCAGAGGTGGCAT 10046155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434594630433600