Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq4557 91.5 1e-13 >seq4557 Length=5370844 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || ||||| || |||||||| Sbjct 897229 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 897288 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || || || | ||| ||||| |||||| Sbjct 897289 CTGGTGCTGAAACCCTGCTTATCCAGGAATTCACGTGATCCATTAGCATCCCAAATCTTC 897348 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| | ||||| || |||| Sbjct 897349 ACACCCTTTGCAGAGAGTTCTTTGG 897373 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| || ||||| | ||| |||||||| ||||| ||| | || || || || || | Sbjct 897373 CCAAAGAACTCTCTGCAAAGGGTGTGAAGATTTGGGATGCTAATGGATCACGTGAATTCC 897314 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | | |||||||| || ||||| || || || || |||| Sbjct 897313 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGGGATTTGGGACCAGTTTATGGTTTCC 897254 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || || || Sbjct 897253 AGTGGAGGCACTTTGGAGCAGAATA 897229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447928696659600