Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2428 138 3e-27 seq631 123 6e-23 seq3820 93.3 1e-13 >seq2428 Length=1050118 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || || ||||| || || |||| ||||| |||| | ||| | ||||| Sbjct 346549 CAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATC 346608 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || ||||| ||||| ||||||||||| Sbjct 346609 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 346668 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 346669 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 346728 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | || | |||||||| Sbjct 346729 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 346764 >seq631 Length=15915561 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || |||||||| || |||| ||||| |||| | || | |||||| Sbjct 10046172 CAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATC 10046231 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| || | || || ||||| || || || |||||||| Sbjct 10046232 CTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTC 10046291 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || || |||||||| || || || || | ||||| || Sbjct 10046292 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGT 10046351 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || || | ||| | |||||||| Sbjct 10046352 CTTGCCGGTCAGCGTCTTCACGAAGATCTGCATTTT 10046387 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || |||||||| || |||| ||||| |||| | || | |||||| Sbjct 10045716 CAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATC 10045775 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| || | || || ||||| || || || |||||||| Sbjct 10045776 CTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTC 10045835 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || || |||||||| || || || || | ||||| || Sbjct 10045836 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGT 10045895 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 10045896 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 10045928 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| || |||||||| || |||| ||||| |||| | || | |||||| Sbjct 10045944 CAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATC 10046003 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 || |||||||| ||||||||||| || | || || ||||| || || || |||||||| Sbjct 10046004 CTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTC 10046063 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || || |||||||| || || || || | ||||| || Sbjct 10046064 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGT 10046123 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 10046124 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 10046156 >seq3820 Length=14059 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || |||||||| || ||||| ||||| || || || |||||||| |||||||| || || Sbjct 4036 TGTCCATCAGTGATGGAGATGACATTGGTTGGAATGTAAGCAGACACATCACCAGCCTGA 4095 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 ||||| | ||||| ||||| || || || ||||||||||| Sbjct 4096 GTTTCAATGACAGGCAAGGCAGTCAGAGAGCCACCACCAAA 4136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191621240931170