Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq4557 91.5 1e-13 seq1243 91.5 1e-13 >seq4557 Length=5370844 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || |||||||||||||| || || || ||||||| || ||||| || || ||||| ||| Sbjct 897241 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGGTGCT-GAA 897299 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || ||||| | Sbjct 897300 ACCCTGCTTATCCAGGAATTCACGTGATCCATTAGCATCCCAAATCTTCACACCCTTTGC 897359 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||||| ||||||| ||||| || || Sbjct 897360 AGAGAGTTCTTTGGCATTTGTAGAACC 897386 >seq1243 Length=2223649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| | | ||| | |||||| || || Sbjct 135637 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 135696 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 135697 ATGGAGAACCAGGTTTTTTTACCCATTATCAGGGCATTCTGTTTACCT 135744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405868395960730