Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2428 123 6e-23 seq631 107 4e-18 >seq2428 Length=1050118 Score = 123 bits (136), Expect = 6e-23 Identities = 165/228 (72%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || |||||||| || || ||||| || ||||||||||| |||| | ||| Sbjct 346540 CCTGAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGT 346599 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| ||||||||||| || | | || || Sbjct 346600 GCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCC 346659 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || || ||| |||| | | |||| ||| ||| || || Sbjct 346660 TTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTC 346716 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| || || |||||||| |||| ||||||||| Sbjct 346717 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 346764 >seq631 Length=15915561 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || ||||||||||| |||| | || | |||||| || | Sbjct 10046178 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCA 10046236 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| ||||||||||| || | | ||| || ||||| || || | Sbjct 10046237 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGA 10046296 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| |||| | | |||| ||| || || || || || || |||| Sbjct 10046297 TCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGC 10046356 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || ||||||||||||| ||||||||| Sbjct 10046357 CGGTCAGCGTCTTCACGAAGATCTGCATTTT 10046387 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || ||||||||||| |||| | || | |||||| || | Sbjct 10045722 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCA 10045780 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| ||||||||||| || | | ||| || ||||| || || | Sbjct 10045781 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGA 10045840 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| |||| | | |||| ||| || || || || || || |||| Sbjct 10045841 TCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGC 10045900 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| |||||| Sbjct 10045901 CGGTCAGGGTCTTCACGAAGATCTGCAT 10045928 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || ||||||||||| |||| | || | |||||| || | Sbjct 10045950 CAAG-TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCA 10046008 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| ||||||||||| || | | ||| || ||||| || || | Sbjct 10046009 GCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGA 10046068 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| |||| | | |||| ||| || || || || || || |||| Sbjct 10046069 TCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGC 10046128 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| |||||| Sbjct 10046129 CGGTCAGGGTCTTCACGAAGATCTGCAT 10046156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152940378841405