Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq2076 179 5e-40 seq1248 89.7 7e-13 >seq2076 Length=3610989 Score = 179 bits (198), Expect = 5e-40 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || |||||||||||||| ||| ||| |||||||| || |||||||| Sbjct 176272 ATGAGTCTAGTAGTTTGGAACAGTTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 176213 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 176212 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 176153 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || ||||||| | ||| || ||| || || | |||||| Sbjct 176152 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACATGGGGAGGG 176093 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || |||| || ||||||||||| || ||||||||| Sbjct 176092 TAGATCATCTCTGCCTGAGTGTCCTTTACCGTTGGTGGATACATTTCTCCATCAATCATC 176033 Query 9484 TG 9485 || Sbjct 176032 TG 176031 Score = 150 bits (166), Expect = 3e-31 Identities = 180/241 (75%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | ||| || |||||||| |||||||||||| | ||||||||||| | || Sbjct 178220 AAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGGAGCAGATAGCATTT 178161 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || ||||| || |||||||| || || | ||| | || | ||||| |||||| Sbjct 178160 CCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTGTTTCACCAAAGATG 178101 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || || || |||||||| || ||||| || | ||| ||||||| ||| || | ||| Sbjct 178100 GCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCTGGGTAGAGCTCCATAGCATCAATGTC 178042 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT--TTTATTAATAAAA 8599 ||| ||||| | |||||| || || || || ||||||||||| || || | ||||| Sbjct 178041 TCCATAAAGCTCTTCGAGTTCAGCTGCCATTTCTTTTTCTCCTGTAATTGATAAGTAAAA 177982 Query 8600 A 8600 | Sbjct 177981 A 177981 >seq1248 Length=7382639 Score = 89.7 bits (98), Expect = 7e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| || ||| | || || | ||||||| || || ||||| ||||||||| | |||| Sbjct 5146372 TCTTAACTATCTCAAAGCCAATTGCTCCGCCAAATGTACTGGGTTTCCAGTACTCTGGGG 5146313 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | || || || || || |||||||| || | ||| | |||| Sbjct 5146312 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGTGAAAACGGAGCTCCTATCTCCACCATGC 5146253 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || || | ||||| |||| || || | || || || || | ||||| Sbjct 5146252 TTTCTCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 5146193 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 ||| || | |||||| || || Sbjct 5146192 GAGCATCAATGTCTCCATACAG 5146171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716343130027200