Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq631 138 3e-27 seq2428 136 1e-26 seq2998 84.2 5e-11 >seq631 Length=15915561 Score = 138 bits (152), Expect = 3e-27 Identities = 170/230 (74%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| || || || || || || |||||||| ||||| || Sbjct 10046387 AAAATGC---AGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTTGA- 10046332 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| ||||||||||| ||||| |||||||| || || ||||| | Sbjct 10046331 -GCCCAGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCC 10046273 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| | || |||||||| || || ||||| || ||||| | || || ||| Sbjct 10046272 CCGATCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCG 10046213 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || ||| |||| || ||||| || ||||| | || || | |||||| Sbjct 10046212 ACTACAACATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTCAGA 10046163 Score = 136 bits (150), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| ||||| || || ||| Sbjct 10046153 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGCG 10046096 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| || || ||||| || || |||| Sbjct 10046095 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCAGC 10046036 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| || ||||| | || || |||| || ||| Sbjct 10046035 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAACA 10045976 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || ||||| | || || | |||||| Sbjct 10045975 TCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTCAGA 10045935 Score = 134 bits (148), Expect = 3e-26 Identities = 156/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| ||||| || || ||| Sbjct 10045925 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGCG 10045868 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| || || ||||| || || |||| Sbjct 10045867 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCAGC 10045808 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| || ||||| | || || |||| || ||| Sbjct 10045807 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAACA 10045748 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || ||||| || ||||| |||| Sbjct 10045747 TCCAGAAGGAATCCACCCTGCA-CTTG 10045722 >seq2428 Length=1050118 Score = 136 bits (150), Expect = 1e-26 Identities = 169/229 (74%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || || || || || || |||||||| ||||| || Sbjct 346764 AAAATGC---AGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGA- 346709 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| ||||| || || ||||| |||||||| ||||| || || | Sbjct 346708 -GCCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCC 346650 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| | || ||||| || || || ||||| |||||||| | ||||| ||| Sbjct 346649 CCGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCCG 346590 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | || ||| |||| || || || || ||||||||||| || | ||||| Sbjct 346589 ACTACAACATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTCAG 346541 >seq2998 Length=790846 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || ||||| |||||||| ||||||||| | || Sbjct 710961 CAGATCTTCGTGAAGACGCTGACGGGTAAAACCATCACCCTGGAGGTGGAACCCAACGAT 710902 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || ||||||||||||||| ||||| ||||| || ||||| Sbjct 710901 ACGATCGAGAACGTCAAAGCCAAGATCCAGGATAAGGAAGG 710861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202812694788670