Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 1e-15 seq3 87.8 2e-12 >seq2 Length=147128157 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| ||||| ||||| || || ||||| || | ||||| Sbjct 127698068 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 127698127 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||| ||||| ||||||||||| ||||||||||| || || ||||| | ||||| || Sbjct 127698128 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 127698186 >seq3 Length=112045409 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||| ||||| || | ||| ||||||||||| ||||| || || ||||||||||| Sbjct 97250732 ATGTACGTGTCAATGAGAAGACTATACATTTCTGAATGTATATTTTCCATGGCTATCTGG 97250673 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || |||||||| || || || || | ||||| ||||| Sbjct 97250672 AAGCCATAGAAACAACGCGCTTCTGTGATTTGCACTTC 97250635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511398635651120