Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 114 2e-20 seq1 96.9 4e-15 seq3 89.7 6e-13 >seq2 Length=147128157 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 127698066 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 127698125 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | |||||||| || |||||||| || ||||| ||||| ||||||| Sbjct 127698126 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 127698185 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 127698186 CAACCACTCTCTCACC 127698201 >seq1 Length=194437802 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || ||||| || || |||||| ||| | || ||||| || ||||| | Sbjct 192634931 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 192634990 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || || ||||||||||||||||| |||||||| ||||| || | ||| | | Sbjct 192634991 TGAGAGACTGGCTCTGATCGATGAAGGCTCCTCTGTCTGCTGCCATCTTGAGGATAATTT 192635050 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA 53022 | || | || ||||| | || ||||| Sbjct 192635051 TCTGGGAGATCTCCCACACCGTCTTATA 192635078 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 || || || || ||||||| || || ||| |||||||| || || || | ||||||||| Sbjct 192639326 TAGGTTTCATAGGGTCCTTGCTCCTGAGCGAGTTCACAGCTGGCTTCCAGAGCACCGTAA 192639385 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 |||||||| || ||||||| || || || || || || |||| ||||| || | Sbjct 192639386 TAAATGGTCTCAAAGATCTGCTGGTTCAGGCGCTGGGCCTCGGGGCTTTCAAAGGGGAAC 192639445 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559 | | || || || || || || | || || || |||||||| || || Sbjct 192639446 CTCATCAGGATGAAGGCATCAGCCAGGCCCTGCACGCCAATACCAATGGG 192639495 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 |||| ||||||||||||||||||||||| || || | || || ||||||| | || Sbjct 192642977 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGGGCGAAGAAAAGGTCTCTGGCACGCTGC 192643036 Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || || || || ||||| |||||| || || ||| | | || || |||||||| Sbjct 192643037 TCTTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAGGTGCCACGG 192643095 Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174 ||||| ||| |||| | | | ||||| Sbjct 192643096 TTCCAGGTAGATGGCAAAAGCCCCAGG 192643122 >seq3 Length=112045409 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 24387 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 24446 || ||| |||||||| || || ||||| | ||||||||||||||| ||||| || ||| Sbjct 97250747 TCTTTAGAATCTTTAATGTACGTGTCAATGAGAAGACTATACATTTCTGAATGTATATTT 97250688 Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || ||||| || || || || |||||||| | || || || || || |||||| Sbjct 97250687 TCCATGGCTATCTGGAAGCCATAGAAACAACGCGCTTCTGTGATTTGCACTTCT 97250634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593703298531680