Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq16 197 2e-45 seq9 125 9e-24 >seq16 Length=20042104 Score = 197 bits (218), Expect = 2e-45 Identities = 250/341 (73%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 83055 GGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGC 83114 ||||||| |||||||||| | || | ||||| | || | ||||||| | || Sbjct 2580983 GGAGCAGCAGCTCGATGTCGTCCCGCAGCTTGATGGTCTCGAAGTGCCGGCTGTAGCGGC 2581042 Query 83115 GCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGC 83174 | | |||| |||||| | ||||||| |||||||||||||||||||| | |||||||| Sbjct 2581043 GGAAGGGCACGCCGTCGGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGC 2581102 Query 83175 GGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGC 83234 ||||||| || |||||| ||| ||| |||| | ||| |||| | ||||||| Sbjct 2581103 GGCACACCGGCGACCAGATGATGTACTGCGGGTTGGTCATCAGCGCCGACGGGTCGTCGT 2581162 Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC-CCTTGCACCGTTG 83293 || ||||| ||||||| ||||||||||| ||||| || || || | | ||||| Sbjct 2581163 GCGGGAAGGGCAGCGCCTCTCTCAGGAAGGCGAACAGCGGGTGCGCGCCCTTC-CCGTTC 2581221 Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353 ||||||||||||||||| | | ||||| |||| ||||||||| || || || |||| | Sbjct 2581222 ACCTCGCACTTCTCGAACATGGTGAAGTTGGGCTTGAAGCCGTTGCCGGGCCGCACGTAC 2581281 Query 83354 TTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | ||| || ||| |||||| | || |||||| ||||| Sbjct 2581282 TCCAGCGAGCGCAGGATCTCCTCGTTGGTGGCGTTCTCCTG 2581322 >seq9 Length=61178980 Score = 125 bits (138), Expect = 9e-24 Identities = 124/158 (78%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 83386 GTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCC 83445 |||| |||||| ||||||||||| || ||||| || ||||| ||||||| ||| | Sbjct 1772755 GTTTACCTGGTAGCCGAACTGGTTGCAGGGGAAGCCCAGCACCACCAGCCGCCGTGGG-- 1772698 Query 83446 TAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGA 83505 ||| ||| |||||||| ||| | ||| ||||| ||||| |||||| | |||||||| || Sbjct 1772697 TAG-CGCGCCTGCAGCTGGTTGAGCTGGGTGTAGTCCCGCACCGTGGTGCCTCAGAGCGA 1772639 Query 83506 CGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 ||| |||||||||||||| | || || || || |||| Sbjct 1772638 CGCCACGTTCTCGATGAGGACCACACGCCCGCGGAAGA 1772601 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/271 (69%), Gaps = 14/271 (5%) Strand=Plus/Minus Query 83135 CCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCA 83194 ||||||| ||||||||| |||||||||| | |||| ||| | ||| || ||| | Sbjct 1773083 CCCACCAGGAACTTCTCAAAGTTCCAGGAGATGTCGGAGCGCCGCACGGGGCTCCACACC 1773024 Query 83195 ATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG--TCGTCGCTAGGCGCCGGCAGG---G 83249 | || |||| ||| || || ||| || || ||||| || || |||||| | Sbjct 1773023 AGGAAACGGGGTTCGGCCATCAG-GTGATC-TGCCTCGTCCACGGGGGCGGGCAGGTGGG 1772966 Query 83250 CCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACCTCGCACTTCTC 83307 ||| || ||| ||||||||| || || || |||| | |||| |||| |||||||| Sbjct 1772965 CCT-TC--AGGTAGGCGAAGACGGGGTGGGTGTCCTTCC--CGTTCACCTGGCACTTCTG 1772911 Query 83308 GAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAA 83367 ||| || | || || |||||||||||| ||| || || ||||| || ||| | | Sbjct 1772910 GAACAGGGTGAAATTGGGCTCGAAGCCGCCCCCGGGCCGCACGTGTTTGAGGCAGTTGAG 1772851 Query 83368 GATCTCGGCATTCTGGGCGTTTTCCTGGTGA 83398 |||||| | || | |||| |||||| || Sbjct 1772850 GATCTCCTCGTTGGTGCCGTTCTCCTGGCGA 1772820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608778033838640