Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq19 156 4e-33 seq23 138 1e-27 seq3 129 6e-25 seq2 84.2 2e-11 >seq19 Length=13198683 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| || Sbjct 4747420 AACATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAACCC 4747479 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||||| || || | ||||| || ||||| ||| | || Sbjct 4747480 AGTGATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAT 4747539 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| |||| ||||||||| |||||| Sbjct 4747540 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTAC 4747599 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| || ||||| || ||||| ||||||| ||| Sbjct 4747600 AACATCCAGAAGGAGTCCACTCTCCATCTTGTTCTGCGCCTGAGGGGTGGC 4747650 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| |||||||| || | |||||| || ||||||||||||||||||| Sbjct 4748020 ATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCCGACTACAACATCCAGAAG 4748079 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| |||| ||||| || ||| ||||| ||||||| || Sbjct 4748080 GAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 4748117 >seq23 Length=10219231 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || || || ||||| ||||||||| | || || || | Sbjct 6724348 AAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCC 6724407 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | ||| | |||| || |||| ||||| || ||||| || | || Sbjct 6724408 CAGTGACACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCCGA 6724467 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | || |||| || ||||| || ||||| || | |||||||| ||||| Sbjct 6724468 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACCCTGTCTGACTA 6724527 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| || || || ||| ||||||||||||| || Sbjct 6724528 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGCTTGAGGGGAGG 6724578 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 40825 GCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCC 40884 || ||||| |||||||| |||| ||||||||| |||||||||||||||||||| || Sbjct 6725359 GCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAATCC 6725418 Query 40885 ACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||| || ||| ||||| ||||||| ||| Sbjct 6725419 ACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 6725451 >seq3 Length=112045409 Score = 129 bits (142), Expect = 6e-25 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||||||||| ||||||||||| || ||||| ||||||||||| || |||| ||| Sbjct 97249859 GAACCGCTGCTGCGGGAGAACCCCCGGCGCTTCGTCATTTTCCCCATCCAGTACCACGAC 97249918 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 97249919 ATCTGGCGGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 97249972 >seq2 Length=147128157 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 127698191 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCTGCTATATTTT 127698132 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || |||||||| ||| || || || ||| | Sbjct 127698131 GGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAG 127698072 Query 117162 ACGAGG 117167 | |||| Sbjct 127698071 ATGAGG 127698066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515203318368160