Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq3 125 1e-23 >seq3 Length=112045409 Score = 125 bits (138), Expect = 1e-23 Identities = 109/133 (82%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||||||| | ||||| ||||| |||||||||||||||| |||||||| Sbjct 79420283 GCTTTTTTTGGAGCTCAGATGAATTCATTTATTCATGTTATTATGTACATGTATTATGGA 79420342 Query 52117 ATGGCCGCTTGTGGTCCT-ATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| ||| | ||||||||| ||||| |||||||| || || | ||||| Sbjct 79420343 TTAGCTGCCTGTGGCCCTAAAGTTCAGAAA-TATCTGTGGTGGAAGCGATACTTGACTAT 79420401 Query 52176 AATGCAGTTGGTA 52188 | |||| |||||| Sbjct 79420402 ATTGCAATTGGTA 79420414 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 79421163 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 79421222 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| || | | ||||| || ||||||| Sbjct 79421223 CCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCTTGTTTGG 79421282 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | || || ||| Sbjct 79421283 TAACTTCTACTATCGGACTTATAAG 79421307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923168342458640