Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq5 755 0.0 seq22 136 4e-27 >seq5 Length=97484820 Score = 755 bits (836), Expect = 0.0 Identities = 447/465 (96%), Gaps = 1/465 (0%) Strand=Plus/Plus Query 138912 GCCCCGCGGGTTTATTCAGTGCTGCGCCGATTCTACCCGCAGGACTCGCACATTTCTGAG 138971 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 4164302 GCCCCGCGGGTTTATTCAGTGCTGCGCCGATTCTACCCGCAGGACCCGCACATCTCTGAG 4164361 Query 138972 GGTATCGGACTTCTCTATCCCCACATATTCTAGCAACGGTTCTCCATCGCGCAATTAAAG 139031 ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 4164362 GGTATCGGACTTCTCCATCTCCACATATTCTAGCAACGGCTCTCCATCGCGCAATTAAAG 4164421 Query 139032 CACGATTAAGTACCCCAAGTTCACTGACTCTTCGTGCAAAAGGGGGAAAA-AAGAAAGCC 139090 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 4164422 CACGATTAAGTACCCCAAGTTCACTGACCCTTCGTGCAAAAGGGGGAAAAAAAGAAAGCC 4164481 Query 139091 GAGACCACAAGATGGCACTGACCCCGTGCACGGGGATCTGCGGGACGGGTGATGACCCGG 139150 ||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| Sbjct 4164482 AAGACCACAAGATGGCACTGGCCCCATGCACGGGGATCTGCGGGGCGGGTGATGACCCGG 4164541 Query 139151 GGGCATCGCACTGCGCTCAGCCCAAGCCCCAGGGCCACGTCTTTGTGCACGCTCATGCCC 139210 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| Sbjct 4164542 GGGCATCGCACTGCGCTCAACCCAAGCCCCAGGGCCACGTCTTTGTACACGCTCCTGCCC 4164601 Query 139211 TGCACGGCCCACACGTTTGCCCACGCTTATTGCGGAGCGTGCCGAGGCAGAGGACGGCTC 139270 |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| || Sbjct 4164602 TGCACGGCCCACACGTGTGCCCACGCTTATGGCGGAGCGTGCCGAGGCAGAGGACGGGTC 4164661 Query 139271 CTGCCGGGACAGGGCTCCGCGCTGCGCACCGCCACACGTCCAGGCCAGGACTCGGCGCCT 139330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4164662 CTGCCGGGACAGGGCTCCGCGCTGCGCACCGCCACACGTCCAGGCCAGGACTCGGCGCCT 4164721 Query 139331 GGGCGCCCGGCACGGCCGCGGACGGACCCCGGTAGCCCCGAGCGG 139375 |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 4164722 GGGCGCCCGGCACGGCCGCGGACGGACCCCGGCAGCCCCGAGCGG 4164766 Score = 755 bits (836), Expect = 0.0 Identities = 447/465 (96%), Gaps = 1/465 (0%) Strand=Plus/Minus Query 2245 CCGCTCGGGGCTACCGGGGTCCGTCCGCGGCCGTGCCGGGCGCCCAGGCGCCGAGTCCTG 2304 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4164766 CCGCTCGGGGCTGCCGGGGTCCGTCCGCGGCCGTGCCGGGCGCCCAGGCGCCGAGTCCTG 4164707 Query 2305 GCCTGGACGTGTGGCGGTGCGCAGCGCGGAGCCCTGTCCCGGCAGGAGCCGTCCTCTGCC 2364 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 4164706 GCCTGGACGTGTGGCGGTGCGCAGCGCGGAGCCCTGTCCCGGCAGGACCCGTCCTCTGCC 4164647 Query 2365 TCGGCACGCTCCGCAATAAGCGTGGGCAAACGTGTGGGCCGTGCAGGGCATGAGCGTGCA 2424 |||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| | Sbjct 4164646 TCGGCACGCTCCGCCATAAGCGTGGGCACACGTGTGGGCCGTGCAGGGCAGGAGCGTGTA 4164587 Query 2425 CAAAGACGTGGCCCTGGGGCTTGGGCTGAGCGCAGTGCGATGCCCCCGGGTCATCACCCG 2484 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 4164586 CAAAGACGTGGCCCTGGGGCTTGGGTTGAGCGCAGTGCGATGCCCCCGGGTCATCACCCG 4164527 Query 2485 TCCCGCAGATCCCCGTGCACGGGGTCAGTGCCATCTTGTGGTCTCGGCTTTCTT-TTTTC 2543 |||||||||||||||||| |||| ||||||||||||||||||| ||||||||| ||||| Sbjct 4164526 CCCCGCAGATCCCCGTGCATGGGGCCAGTGCCATCTTGTGGTCTTGGCTTTCTTTTTTTC 4164467 Query 2544 CCCCTTTTGCACGAAGAGTCAGTGAACTTGGGGTACTTAATCGTGCTTTAATTGCGCGAT 2603 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 4164466 CCCCTTTTGCACGAAGGGTCAGTGAACTTGGGGTACTTAATCGTGCTTTAATTGCGCGAT 4164407 Query 2604 GGAGAACCGTTGCTAGAATATGTGGGGATAGAGAAGTCCGATACCCTCAGAAATGTGCGA 2663 ||||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| Sbjct 4164406 GGAGAGCCGTTGCTAGAATATGTGGAGATGGAGAAGTCCGATACCCTCAGAGATGTGCGG 4164347 Query 2664 GTCCTGCGGGTAGAATCGGCGCAGCACTGAATAAACCCGCGGGGC 2708 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4164346 GTCCTGCGGGTAGAATCGGCGCAGCACTGAATAAACCCGCGGGGC 4164302 Score = 618 bits (684), Expect = 5e-172 Identities = 429/500 (86%), Gaps = 55/500 (11%) Strand=Plus/Minus Query 1361 CTCTTCCTATAGGTAGATACAGGACATGTTTTAACGAGGTTCTGCGCTAAATCCAGGGCG 1420 ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 4165986 CTCTTTCTGTAGGTAGATACAGGACATGTTTTAACGAGGTTCTGCGCGAAATCCAGGGCG 4165927 Query 1421 GGAAAGCTCAGCCCGCATCTCGCAGCCCCCGGATCCGATCCCGCAGACCCCGGCCCACAG 1480 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4165926 GTAAAGCTCAGCCCGCATCTCGCAGCCCCCGGATCCGATCCCGCAGACCCCGGCCCACAG 4165867 Query 1481 GAAGGGGCGGGGCACGTGCATGGGGCGTGGC----------------------------- 1511 |||||||||||||||||||| |||||||||| Sbjct 4165866 GAAGGGGCGGGGCACGTGCAGGGGGCGTGGCCACGGCTCGGCCCGGCCCGGCCCGGCCCG 4165807 Query 1512 -----------------GGGAGATGAATGACCGCGGAGTTCCAAACTCCCGC-ACCGGCC 1553 ||||||||||||||||||||||||||||||||||| |||| || Sbjct 4165806 GCAGCACGCGGCGTGGCGGGAGATGAATGACCGCGGAGTTCCAAACTCCCGCCACCGTCC 4165747 Query 1554 CCTCTCTGCTCGCTCTCCTCCCCGCCGCCAATAGCTACGCGGCAGCGTACAGCCCGGCCA 1613 |||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 4165746 CCTCTCCGCCCGCTCTCCTCCCCGCCGCCAATAGCTGCGCGGCAGCGTGCAGCCCGGCCA 4165687 Query 1614 ATAGGCGCGCGGTGGGCGTAGGCGGAGGAAGCTACAAGAGCCCCACGCGGGGTTCCCCCG 1673 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 4165686 ATAGGCGCGCGGTGGGCGTAGGCGGAGGAGGCTACAAGAGCCCCACGCGGGGTTCCCCCG 4165627 Query 1674 GCACACGTGGCGGGTGGAAGGCTCCGCTGTGTCTAACCCTAATCGGAGGTATTGATGGTA 1733 |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 4165626 GCACGCGTGGCGGGTGGAAGGCTCCGCTGTGTCTAACCCTAATCGGGGGTATTGATGGTG 4165567 Query 1734 CTGTCGCCGCGCTCCCTCCGCCCGCTG--------TTTACTCGCTGACTTTCAGCGGGCT 1785 ||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 4165566 CTGTCGCCGCGCTCCCTCCGCCCGCCGCCCGCTGTTTTACTCGCTGACTTTCAGCGGGCG 4165507 Query 1786 AGGGGAGCCGCCCCAGGGGG 1805 |||||||||||||||||||| Sbjct 4165506 AGGGGAGCCGCCCCAGGGGG 4165487 Score = 616 bits (682), Expect = 2e-171 Identities = 428/499 (86%), Gaps = 55/499 (11%) Strand=Plus/Plus Query 139816 CCCCTGGGGCGGCTCCCCTAGCCCGCTGAAAGTCAGCGAGTAAA--------CAGCGGGC 139867 ||||||||||||||||||| |||||||||||||||||||||||| | |||||| Sbjct 4165488 CCCCTGGGGCGGCTCCCCTCGCCCGCTGAAAGTCAGCGAGTAAAACAGCGGGCGGCGGGC 4165547 Query 139868 GGAGGGAGCGCGGCGACAGTACCATCAATACCTCCGATTAGGGTTAGACACAGCGGAGCC 139927 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 4165548 GGAGGGAGCGCGGCGACAGCACCATCAATACCCCCGATTAGGGTTAGACACAGCGGAGCC 4165607 Query 139928 TTCCACCCGCCACGTGTGCCGGGGGAACCCCGCGTGGGGCTCTTGTAGCTTCCTCCGCCT 139987 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 4165608 TTCCACCCGCCACGCGTGCCGGGGGAACCCCGCGTGGGGCTCTTGTAGCCTCCTCCGCCT 4165667 Query 139988 ACGCCCACCGCGCGCCTATTGGCCGGGCTGTACGCTGCCGCGTAGCTATTGGCGGCGGGG 140047 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 4165668 ACGCCCACCGCGCGCCTATTGGCCGGGCTGCACGCTGCCGCGCAGCTATTGGCGGCGGGG 4165727 Query 140048 AGGAGAGCGAGCAGAGAGGGGCCGGT-GCGGGAGTTTGGAACTCCGCGGTCATTCATCTC 140106 ||||||||| || |||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 4165728 AGGAGAGCGGGCGGAGAGGGGACGGTGGCGGGAGTTTGGAACTCCGCGGTCATTCATCTC 4165787 Query 140107 CC----------------------------------------------GCCACGCCCCAT 140120 || |||||||||| | Sbjct 4165788 CCGCCACGCCGCGTGCTGCCGGGCCGGGCCGGGCCGGGCCGAGCCGTGGCCACGCCCCCT 4165847 Query 140121 GCACGTGCCCCGCCCCTTCCTGTGGGCCGGGGTCTGCGGGATCGGATCCGGGGGCTGCGA 140180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4165848 GCACGTGCCCCGCCCCTTCCTGTGGGCCGGGGTCTGCGGGATCGGATCCGGGGGCTGCGA 4165907 Query 140181 GATGCGGGCTGAGCTTTCCCGCCCTGGATTTAGCGCAGAACCTCGTTAAAACATGTCCTG 140240 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 4165908 GATGCGGGCTGAGCTTTACCGCCCTGGATTTCGCGCAGAACCTCGTTAAAACATGTCCTG 4165967 Query 140241 TATCTACCTATAGGAAGAG 140259 |||||||||| || ||||| Sbjct 4165968 TATCTACCTACAGAAAGAG 4165986 Score = 237 bits (262), Expect = 2e-57 Identities = 143/151 (95%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 139373 CGGCGCCCAGCGGGCACCACCTGCGCAGGGACCGGGCTCGAGCGCCCACCTCCGCGGGGG 139432 ||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||| Sbjct 4164965 CGGCGCCCAGCGGGCTCCACCTGCGCAGGGACCGGGCCCGACCGCCCACCTCAGCGGGGG 4165024 Query 139433 GCCCGTTCGGTCTACTCACAGAGCCCCGCGCGCGGCTCAACGGCTCCAACGGTCGTGCGC 139492 ||||| | ||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 4165025 GCCCGCTGGGTCTCCTCACAGAGCCCCGCGCGCGGCCCAACGGCTCCAACGGTCGTGCGC 4165084 Query 139493 GCGGGGCCGCGCGTGTGGGAGCGACGCCGTC 139523 ||||||||||||||||||||||||||||||| Sbjct 4165085 GCGGGGCCGCGCGTGTGGGAGCGACGCCGTC 4165115 Score = 237 bits (262), Expect = 2e-57 Identities = 143/151 (95%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 2097 GACGGCGTCGCTCCCACACGCGCGGCCCCGCGCGCACGACCGTTGGAGCCGTTGAGCCGC 2156 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 4165115 GACGGCGTCGCTCCCACACGCGCGGCCCCGCGCGCACGACCGTTGGAGCCGTTGGGCCGC 4165056 Query 2157 GCGCGGGGCTCTGTGAGTAGACCGAACGGGCCCCCCGCGGAGGTGGGCGCTCGAGCCCGG 2216 ||||||||||||||||| ||||| | |||||||||||| |||||||||| ||| |||||| Sbjct 4165055 GCGCGGGGCTCTGTGAGGAGACCCAGCGGGCCCCCCGCTGAGGTGGGCGGTCGGGCCCGG 4164996 Query 2217 TCCCTGCGCAGGTGGTGCCCGCTGGGCGCCG 2247 ||||||||||||||| ||||||||||||||| Sbjct 4164995 TCCCTGCGCAGGTGGAGCCCGCTGGGCGCCG 4164965 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/162 (74%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 3152 ATTTTGGCCAAGTAATAGA-GCTTACTTACATAATTTCAGTCCTCCTGCAGTGTATACCC 3210 ||||| |||| | ||| ||| |||||||| || || |||||| |||||| ||||| Sbjct 40055802 ATTTTTGCCAGGCTCCAGACGCTCACTTACATGATCTCCTTCCTCCGGCAGTGAATACCT 40055861 Query 3211 GGTGGTATCACGTCAACAGCGATAATAGGCCCCAAGCCAGTAGGCCGATTAGTGACTTTC 3270 || || ||||||| | |||| || |||||| ||| | | | ||| ||||| Sbjct 40055862 GGCGGCGTCACGTCGATGGCGAGGATGAGCCCCAGGCCGATGACCTGGGCAGTCACTTTG 40055921 Query 3271 ACGCACTTGCACCTCTTG-TCGACAGCGAGACTCTCCAGTGA 3311 |||||||||||||||||| | | |||| || ||||||||||| Sbjct 40055922 ACGCACTTGCACCTCTTGTTGGTCAGC-AGGCTCTCCAGTGA 40055962 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/162 (74%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 138309 TCACTGGAGAGTCTCGCTGTCGA-CAAGAGGTGCAAGTGCGTGAAAGTCACTAATCGGCC 138367 ||||||||||| || |||| | | |||||||||||||||||| ||||| ||| | | Sbjct 40055962 TCACTGGAGAGCCT-GCTGACCAACAAGAGGTGCAAGTGCGTCAAAGTGACTGCCCAGGT 40055904 Query 138368 TACTGGCTTGGGGCCTATTATCGCTGTTGACGTGATACCACCGGGTATACACTGCAGGAG 138427 | ||| |||||| || |||| | ||||||| || || ||||| |||||| |||| Sbjct 40055903 CATCGGCCTGGGGCTCATCCTCGCCATCGACGTGACGCCGCCAGGTATTCACTGCCGGAG 40055844 Query 138428 GACTGAAATTATGTAAGTAAGC-TCTATTACTTGGCCAAAAT 138468 || || || |||||||| ||| ||| | |||| ||||| Sbjct 40055843 GAAGGAGATCATGTAAGTGAGCGTCTGGAGCCTGGCAAAAAT 40055802 >seq22 Length=10643954 Score = 136 bits (150), Expect = 4e-27 Identities = 246/360 (68%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 153607 GATTCGTGAATTGGTCCGAAAATTCCGTGGTCGTCTACTGCCCTTTGAAAAGTGTCCCGA 153666 ||||||||| ||||| || || ||||||||| | ||| ||||| | || ||| | Sbjct 4624822 GATTCGTGAGTTGGTGCGGAAGTTCCGTGGTGAAATGCTGGCCTTTACAGAGCAGCCCCA 4624763 Query 153667 TTTTTGTCTGAGAATTGGGGGTTTGGAGGCCAGCTTTCATAAAGGGCAGGAGGAGCTGTT 153726 || | ||| | | ||||| |||||| | ||| || | ||||||||||||||| Sbjct 4624762 GTTCCGCCTGCGGGTCGGGGGCCTGGAGGGCTCCTTCCACGAGGGGCAGGAGGAGCTGCG 4624703 Query 153727 AGAGTATTGTGAAGCACTTTATTTACCACAACCTGTTAAGATGGAAATAGTAGGCATTGT 153786 ||||| || || | || || | || || || | |||||| | || |||| || Sbjct 4624702 GGAGTACTGCGAGACGCTCTACCTGCCGCAGCCCACCAGGATGGAGGTGGTGGGCACGGT 4624643 Query 153787 AGACGATGTGCCATGTCTGGCAACGGGGATGCAATTACTCATTCTTGTTGCCGAGGGGGG 153846 || || ||||| || ||||| |||||| ||| | |||| || || || ||||| || Sbjct 4624642 GGATGACGTGCCCTGCCTGGCCACGGGGCAGCAGCTCGTCATCCTCGTCGCTGAGGGCGG 4624583 Query 153847 AGAGGTATATGCCTATGAAGAAGATACTCTGCATAAGTTAGCCACGAGTTTTTCCGAATT 153906 ||||| || ||||| || || || || ||||| ||| | |||| ||||| || || || Sbjct 4624582 GGAGGTGTACGCCTACGAGGAGGAGACACTGCACAAGCTTGCCAGGAGTTGGTCTGAGTT 4624523 Query 153907 CCTTGAAATTGGAGTGAAATCTTTAGGGAGGGAGGTTTACCATTGTGGAGAATATATAGA 153966 | ||||||| || | |||| || || ||||| || ||||| || ||||| Sbjct 4624522 CAGGAAAATTGGGCTGCGGCACCTGGGGAAAGAAGTCTACCACTGCGGAGAGTACATAGA 4624463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569051258454240