Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 109 5e-19 seq3 87.8 2e-12 >seq2 Length=147128157 Score = 109 bits (120), Expect = 5e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 16245 CACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTA 16304 |||||| || | | || || || || || | || || || || || | || ||||| | Sbjct 127698054 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCA 127698113 Query 16305 GTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAA 16364 | || | || || | |||||||||||| ||||||||||| |||||||| || ||||||| Sbjct 127698114 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 127698173 Query 16365 CTGCGGCAAATGCAACCAATCGCTCACC 16392 |||| ||||| ||||||| || |||||| Sbjct 127698174 CTGCAGCAAAGGCAACCACTCTCTCACC 127698201 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || ||||| || || | | || |||||| | | || Sbjct 127694527 AAAAATCTGCATCCAGAGTGAAAACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 127694586 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 |||| || ||||| ||| ||||||||||| ||||||||||| | |||||||| |||| Sbjct 127694587 GATACTCCGAAACTCGCTTCTCAAAGAAATTCGTTTTTCCTTCCAGAGAAATATTCTCCA 127694646 Query 16008 TAAAATCAAAAGGATTTT 16025 | |||||||||||||||| Sbjct 127694647 TGAAATCAAAAGGATTTT 127694664 >seq3 Length=112045409 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16490 TCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549 ||||| |||| ||| || || || || || | |||||||||||||||||| ||||| Sbjct 97250747 TCTTTAGAATCTTTAATGTACGTGTCAATGAGAAGACTATACATTTCTGAATGTATATTT 97250688 Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||| |||||||| || ||||| || || | ||||| | ||||| ||||| Sbjct 97250687 TCCATGGCTATCTGGAAGCCATAGAAACAACGCGCTTCTGTGATTTGCACTTC 97250635 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 |||||||| ||| ||| | |||||||||| |||| ||| ||||||||||| || || Sbjct 97253693 TTTGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTG 97253634 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | || || || ||||| |||||||||||||| Sbjct 97253633 CCTTCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 97253596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462497743067600