Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq13 343 1e-89 seq35 105 5e-18 >seq13 Length=20192527 Score = 343 bits (380), Expect = 1e-89 Identities = 745/1104 (67%), Gaps = 18/1104 (2%) Strand=Plus/Minus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || ||| | | |||||| || | | ||| | ||||| || | Sbjct 4753617 ATCAACTGCTCGGGGGTGGTCCACGGGGACGAGAAGTCGGTGCAGGACGCCCTGCTGAGC 4753558 Query 107583 AACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACC 107642 |||||||| |||||||| ||| || ||||| || | | ||||| ||||| || Sbjct 4753557 AACCTGGAGGTGAAGAACAAGAGGGACCCTCTTACCCCCGAGGACTACCTGAACATGACG 4753498 Query 107643 AGAGACTGTGAGC-GCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGA 107701 | ||||| ||| ||||||||| || | ||| ||||||| ||||| | || Sbjct 4753497 AAGGACTGC-AGCAGCTTCAAGGAGAGCCGGCGCTACATTGAGTTCCCGCTGAGCGAGGA 4753439 Query 107702 AGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGA 107761 ||| ||||||||||| |||||||| ||||| |||| | ||||| || | || || Sbjct 4753438 GGAGGCCGACTTCCCCATCGCCTACTCCATGGTCATCCACCACAAGATCGAGATGTTCGA 4753379 Query 107762 ACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAA 107821 ||||| ||||| | | || ||||| |||||| | ||||| ||||||||||| || Sbjct 4753378 GCGGCTCCTGCGCTCTCTCTACGCCCCGCAGAACGTCTACTGCGTCCACGTGGACAGCAA 4753319 Query 107822 GTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTT 107881 |||| | | ||| | |||| || |||||| ||||||||||||| ||||| Sbjct 4753318 AGCCCCCGCCGCCTTCCAGCAGGCCGTGCGGGCCATCGCCGCCTGCTTCCCCAACGTCTT 4753259 Query 107882 CATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCT 107941 | ||||||| ||| ||||| || |||||||||||| | |||| || ||||| Sbjct 4753258 CGTGGCCAGCCGCCTGGAGAGCGTGGTGTACGCCTCCTGGTCCCGGCTGCAGGCCGACCT 4753199 Query 107942 GAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATG 108001 ||||| ||| | ||| |||| |||||| | ||||| ||| ||| | || || || || Sbjct 4753198 CAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGCCCTGGCGCTACGTCCTCAACACCTG 4753139 Query 108002 CGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAA 108061 ||| || ||||||||||| |||||||| || |||||||||| || || || || || | Sbjct 4753138 CGGCACCGACTTCCCCATCAAGACCAACGCGGAGATGGTCCGTGCGCTGCAGGTGCTGCA 4753079 Query 108062 GGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATA 108121 ||| ||||||| |||||||| ||| || | | | ||| | | |||||||| || Sbjct 4753078 GGGGCAGAACAGCATGGAGTCGGAGAAGCCGACGGCTTACAAGCAGGAGCGCTGGAAGTA 4753019 Query 108122 CCGCTATGAGGTGACAGACACACTGTACCCTAC---CAGCAAGATGAAGGAC-CCTCCCC 108177 || | | | ||| || ||| | ||| | | || | | || | | || || | Sbjct 4753018 CCACCACCAAGTG---GA-GCACGTCATCCTCCGCACGGCCACAGCAAAGCCGCCGCCGC 4752963 Query 108178 CTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCC 108237 | | ||||||||||| || | ||||| | | || | || ||||| || | Sbjct 4752962 CGCTCCCCTCGCCCATGTTCACGGGCAGCGCCTACATCGCAGCGACGCGGGCCTTCGTGC 4752903 Query 108238 AACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATA 108297 | || || | || |||| | || | | || |||| ||| |||||||| | Sbjct 4752902 AGCACGTGCTGGAGGACCCCGCGGCGCAGCAGTTCCTCGAGTGGGCCAAGGACACCTACA 4752843 Query 108298 GCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTC 108357 |||||||||| ||| | |||||||| || | || || || | |||| ||| | || | Sbjct 4752842 GCCCCGACGAGCACGTGTGGGCCACGCTGAACCGCGCGCCCGGCGTGCCCGGCGCCGTGC 4752783 Query 108358 CTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGC 108417 | | || ||||| || | || ||||||| || | || | || |||||||||| Sbjct 4752782 CCCACAACGACAAGTTCCAGCTGTCCGACATGAACGCGCTGCCCCGCCTGGTCAAGTGGC 4752723 Query 108418 AGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTG---GAATCC 108474 ||||| || || || |||| ||| ||||| || | |||||| | | | ||| Sbjct 4752722 AGTACTTGGACGGCGACACCAGCCGGGGAGCGCCCTACCCGCCCTGCACCGGCCGCTTCC 4752663 Query 108475 ATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATC 108534 | || || | ||||||| |||||| ||||||| || |||||| || | | | || | Sbjct 4752662 AGCGCAG---CGTCTGCATCTACGGGTCCGGGGATGTGGCCTGGATGCTGCGGCAGCACC 4752606 Query 108535 ACCTCTTGGCAAACAAGTTTGAC-CCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAA 108593 |||||||||| |||||||| ||| |||| || || || || | | ||||| | || Sbjct 4752605 ACCTCTTGGCCAACAAGTTCGACACCGA-AGTAGACGACGCCGCCATCCAGTGTCTCGAG 4752547 Query 108594 GAGTACCTACGTCATAAGGCCATC 108617 || |||| || | ||||||| || Sbjct 4752546 AAGCACCTGCGCCGTAAGGCCCTC 4752523 >seq35 Length=75253249 Score = 105 bits (116), Expect = 5e-18 Identities = 220/320 (69%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 108243 GTCTTAGACAACC-CTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCC 108301 || ||||| ||| | |||||| || | | |||| |||| || ||||| || ||||| Sbjct 37793570 GTATTAGAAAACAGCAAAATCCTCAA-ATTTATTGAGTGGGCAAAGGACACTTACAGCCC 37793628 Query 108302 CGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATG--CCTGGCTCTGTTCCT 108359 || || |||| ||||| || ||||| | ||| || ||| || || ||||| || Sbjct 37793629 TGATGAGTACCTGTGGGCAACAATTCAGAGAA-TCCCTG-ATGTCCCAGGTGCTGTTTCT 37793686 Query 108360 ---AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGG 108416 || || |||||| || | || ||||||| ||| | ||| || | ||||||||| Sbjct 37793687 TCTAGTGAC---AAGTATGACGTTTCTGACATGAATGCGCTGGCCCGGTTTGTCAAGTGG 37793743 Query 108417 CAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCAT 108476 |||||| || ||||| || | || ||||| || |||| ||| |||| | ||| Sbjct 37793744 CAGTACTTTGAAGGAGACGTGTCTAAAGGTGCGCCCTACCCACCGTGCAGTGGAGTTCAT 37793803 Query 108477 CGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCAC 108536 | || ||||| | | |||| || |||||| ||||||| || | ||||| ||| Sbjct 37793804 GTTCGTTCCGTCTGCGTGTTTGGGGTAGGAGACCTGAACTGGATGCTGCGAAACCACCAC 37793863 Query 108537 CTCTTGGCAAACAAGTTTGA 108556 |||| || || |||||||| Sbjct 37793864 TTCTTTGCTAATAAGTTTGA 37793883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348258332998884