Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq19 104 2e-17 seq23 100 3e-16 >seq1 Length=194437802 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| || || |||||||| || || || || Sbjct 192641641 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGATTGCTGCATTTGATGGTC 192641700 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||| ||||| || | ||||| || || ||||| |||||||| || ||| Sbjct 192641701 CCCAAGTTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTG 192641760 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||||||||||||||| || Sbjct 192641761 CCGGTCTCCGTCTGCGACTCGATGATGGC 192641789 >seq19 Length=13198683 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| || || ||||| || |||||| | || || ||||| Sbjct 4747420 AACATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAACCC 4747479 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || | |||| | ||||| | || ||||||||||||| | || || || Sbjct 4747480 AGTGATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAT 4747539 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || |||||||| ||| |||||||| || || || || Sbjct 4747540 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTAC 4747599 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || ||||| ||||| || || | |||||||| || Sbjct 4747600 AACATCCAGAAGGAGTCCACTCTCCATCTTGTTCTGCGCCTGAGGGGTGG 4747649 >seq23 Length=10219231 Score = 100 bits (110), Expect = 3e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 6724348 AAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCC 6724407 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | |||| || || | || |||||||||||| | || ||||| Sbjct 6724408 CAGTGACACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCCGA 6724467 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 |||||| | || || || |||||||| || ||||||| | | | || || || | Sbjct 6724468 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGCACCCTGTCTGACT 6724526 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || ||||| || ||||| || | ||||||| |||| Sbjct 6724527 ACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGCTTGAGGGGAGGTA 6724580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445752659250720