Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 120 4e-22 seq1 98.7 1e-15 seq3 89.7 7e-13 >seq2 Length=147128157 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 127698066 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 127698125 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | |||||||| || |||||||| || ||||| ||||| ||||||| Sbjct 127698126 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 127698185 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 127698186 CAACCACTCTCTCACC 127698201 >seq1 Length=194437802 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| || | ||||| ||||||| ||||| Sbjct 34794846 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTATACGCAGTCAATCCAAGA 34794905 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || ||||| || || ||||| ||||||| |||| |||||||||||| Sbjct 34794906 AATACAGCAGTCGTAAGAATGAAGGCTTGCAAGACGATGGATACATCATAGAAA 34794959 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || |||||| ||| | || ||||| || ||||| | Sbjct 192634931 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 192634990 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || || ||||||||||||||||| |||||||| ||||| || | ||| | | Sbjct 192634991 TGAGAGACTGGCTCTGATCGATGAAGGCTCCTCTGTCTGCTGCCATCTTGAGGATAATTT 192635050 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATA 65053 | || | || ||||| | || ||||| Sbjct 192635051 TCTGGGAGATCTCCCACACCGTCTTATA 192635078 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 9269 GAACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGA 9328 |||||||||||| || |||| ||||| ||||| | || | | || |||||||| || Sbjct 34793289 GAACAGATTGATAATGTCCAGGTAGAGGTTGATTGCAGCCAGTATGTACTCTTCAGGGGA 34793348 Query 9329 GAGCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCC 9388 | ||| || || || ||| |||||||| ||||| ||||| ||||| | ||| || || Sbjct 34793349 TAACTTGTGCATCAGCACGTGAGTGTCATAAATAATAAATCCACAGAAGAGAAGTGCTCC 34793408 Query 9389 AAAAGCAGACAGGACCAGCTCCACTGTTTCACT 9421 ||| | | |||||||||| | ||||||| Sbjct 34793409 GGCAGCTGCAAACACCAGCTCCATTATTTCACT 34793441 >seq3 Length=112045409 Score = 89.7 bits (98), Expect = 7e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 36410 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 36469 || ||| |||||||| || || ||||| | ||||||||||||||| ||||| || ||| Sbjct 97250747 TCTTTAGAATCTTTAATGTACGTGTCAATGAGAAGACTATACATTTCTGAATGTATATTT 97250688 Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || ||||| || || || || |||||||| | || || || || || |||||| Sbjct 97250687 TCCATGGCTATCTGGAAGCCATAGAAACAACGCGCTTCTGTGATTTGCACTTCT 97250634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658152511823440