Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 132 7e-26 seq1 100 4e-16 seq3 93.3 6e-14 >seq2 Length=147128157 Score = 132 bits (146), Expect = 7e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 127698066 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 127698125 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | |||||||| || ||||||||||| ||||| ||||| ||||||| Sbjct 127698126 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 127698185 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 127698186 CAACCACTCTCTCACC 127698201 >seq1 Length=194437802 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || |||||| ||| | || ||||| || ||||| | Sbjct 192634931 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 192634990 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || || ||||||||||||||||| |||||||| ||||| || | ||| | | Sbjct 192634991 TGAGAGACTGGCTCTGATCGATGAAGGCTCCTCTGTCTGCTGCCATCTTGAGGATAATTT 192635050 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATA 78932 | || | || ||||| | || ||||| Sbjct 192635051 TCTGGGAGATCTCCCACACCGTCTTATA 192635078 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 |||| ||||||||||||||||||||||| || || | || || ||||||| | ||| Sbjct 192642977 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGGGCGAAGAAAAGGTCTCTGGCACGCTGC 192643036 Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 || || || || || ||||| |||||| || || ||| | | || || |||||||| Sbjct 192643037 TCTTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAGGTGCCACGG 192643095 Query 80058 TTCCAAGTATATGGCCATAACTCCCGGTC 80086 ||||| ||| ||||| | | | || |||| Sbjct 192643096 TTCCAGGTAGATGGCAAAAGCCCCAGGTC 192643124 >seq3 Length=112045409 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 50212 TCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 50271 || ||| |||||||| || || || || | ||||||||||||||| ||||| || ||| Sbjct 97250747 TCTTTAGAATCTTTAATGTACGTGTCAATGAGAAGACTATACATTTCTGAATGTATATTT 97250688 Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || ||||| ||||| || || |||||||| | || || || || ||||||||| Sbjct 97250687 TCCATGGCTATCTGGAAGCCATAGAAACAACGCGCTTCTGTGATTTGCACTTCT 97250634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718246659364240