Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 132 6e-26 seq3 111 2e-19 seq1 96.9 5e-15 >seq2 Length=147128157 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 127698066 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 127698125 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| |||||||| || ||||||||||| ||||| ||||| ||||||| Sbjct 127698126 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 127698185 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 127698186 CAACCACTCTCTCACC 127698201 >seq3 Length=112045409 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||| || ||||| ||||| || ||||||| ||| | || | Sbjct 97252391 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCT 97252332 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || ||||| ||||| |||||||| ||||| ||||| | Sbjct 97252331 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAATATTCCTTCCACTGCTGCAAATG 97252272 Query 42207 C 42207 | Sbjct 97252271 C 97252271 Score = 89.7 bits (98), Expect = 7e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || ||| |||||||| || || || || | ||||||||||||||||||||| || ||| Sbjct 97250747 TCTTTAGAATCTTTAATGTACGTGTCAATGAGAAGACTATACATTTCTGAATGTATATTT 97250688 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||| ||||| || || |||||||| | || || || | || |||||| Sbjct 97250687 TCCATGGCTATCTGGAAGCCATAGAAACAACGCGCTTCTGTGATTTGCACTTCT 97250634 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | || |||||||| || || || || || ||||| ||||| ||| Sbjct 97253690 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 97253631 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || || |||||||||||||| ||||| Sbjct 97253630 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 97253596 >seq1 Length=194437802 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| || || || ||||| || || |||||| |||| | || || || ||||| || | Sbjct 192634931 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 192634990 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| || ||||||||||||||||| |||||||| ||||| || | ||| | | Sbjct 192634991 TGAGAGACTGGCTCTGATCGATGAAGGCTCCTCTGTCTGCTGCCATCTTGAGGATAATTT 192635050 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA 71015 | || | || ||||| | || ||||| Sbjct 192635051 TCTGGGAGATCTCCCACACCGTCTTATA 192635078 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 |||| ||||||||||||||||||||||| || || | || || ||||||| | ||| Sbjct 192642977 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGGGCGAAGAAAAGGTCTCTGGCACGCTGC 192643036 Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || || || || ||||| |||||| || || ||| | | || || |||||||| Sbjct 192643037 TCTTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAGGTGCCACGG 192643095 Query 72141 TTCCAAGTATATGGC 72155 ||||| ||| ||||| Sbjct 192643096 TTCCAGGTAGATGGC 192643110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671118512134160