Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq23 98.7 1e-15 seq1 84.2 2e-11 >seq23 Length=10219231 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 || || || || || |||||||| || || |||| || | ||||| ||||| || || Sbjct 6724548 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGTTGCTTGCC 6724490 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| ||||||| | |||||||||||||| |||||||| ||||| ||| || || Sbjct 6724489 AGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGAATCTTGGCCTT 6724430 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | ||| | ||||| |||| || || |||| || | |||||||| |||| || Sbjct 6724429 CACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 6724370 Query 143167 TTTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 6724369 CTTCACAAAGATCTGCAT 6724352 >seq1 Length=194437802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 157106 ACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTT-TGATTGCTTTT 157164 |||||||| | |||| |||||||||||| || ||| ||| | || |||||||| || Sbjct 192641665 ACTATTTCTGTGCACAGATTGCTGCATTTGATGG-TCCCCAAGTTCTGCTGATTGCTCTT 192641723 Query 157165 GCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 157209 | |||||||| ||| ||||| | |||||| ||||||||||| || Sbjct 192641724 CCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTGCCGGTCTC 192641768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506998771281120