Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 seq3 96.9 3e-15 >seq2 Length=147128157 Score = 105 bits (116), Expect = 6e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 13161 CACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAA 13220 |||| | || | | |||||||| || || || || || || || || | || ||||| | Sbjct 127698054 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCA 127698113 Query 13221 GCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAA 13280 | || | || || | |||||||||||||||||| ||||||||||| || || ||||||| Sbjct 127698114 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 127698173 Query 13281 CTGCTGCAAACGCTATCAACCTTTCACC 13308 |||| ||||| || | || || ||||| Sbjct 127698174 CTGCAGCAAAGGCAACCACTCTCTCACC 127698201 >seq3 Length=112045409 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || ||||| || || || ||||| | |||| ||| || Sbjct 97252389 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCTTC 97252330 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| || || || || ||||||||||| ||||||||||| ||| Sbjct 97252329 AGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAATATTCCTTCCACTGCTGCAAATGCT 97252270 Query 13295 A 13295 | Sbjct 97252269 A 97252269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430969447093332