Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 181 2e-40 seq2 116 9e-21 seq35 89.7 1e-12 >seq3 Length=112045409 Score = 181 bits (200), Expect = 2e-40 Identities = 138/163 (85%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| |||| |||||||| |||||||||||||| | ||||||||| Sbjct 79418367 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACCTAGATACAGTGTTCTTCATC 79418426 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | |||||||| || |||||||||||||| ||||| ||||| ||||| || ||||| Sbjct 79418427 CTGAGGAAGAAATTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 79418486 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 |||||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 79418487 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 79418529 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| || ||||| || || ||||| |||||||| || || |||||||| Sbjct 97252256 GGAGAACGTGTAGTAGCATTTGCAGCAGTGGAAGGAATATTCTTCTCTGGCTCTTTTGCA 97252315 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| |||||||||||||| | ||||| || | ||||| ||||| ||| | Sbjct 97252316 TCAATTTTTTGGCTGAAGAAAAGAGGCTTAATGCCTGGGCTCACTTTTTCTAATGAACTC 97252375 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 97252376 ATCAGTAGAGATGA 97252389 Score = 100 bits (110), Expect = 7e-16 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 78644 GGACAAGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTATGTATACTTAT 78703 ||||| || ||| | |||||| | || |||||||| | || ||||||||||| | ||| Sbjct 79420278 GGACA-GCTTTTTTTGGAGCTCAGATGAATTCATTTATTCATGTTATTATGTACATGTAT 79420336 Query 78704 TACGGTATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGAAGAGATATCTT 78763 || || | ||||| || ||||||| | ||| || ||| ||||||||||| |||| | Sbjct 79420337 TATGGATTAGCTGCCTGTGGCCCTAAAGTTCAGAAATATCTGTGGTGGAAGCGATACTTG 79420396 Query 78764 ACTATAATGCAATTG 78778 |||||| |||||||| Sbjct 79420397 ACTATATTGCAATTG 79420411 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| || || || | ||||| | ||||| || || | Sbjct 97250612 TCTAGGTGGAGCGGTTCAGTCAAGAAGTGCAAATCACAGAAGCGCGTTGTTTCTATGGCT 97250671 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 |||||||||| || |||||||| |||||||| ||||| ||||| | || || || || | Sbjct 97250672 TCCAGATAGCCATGGAAAATATACATTCAGAAATGTATAGTCTTCTCATTGACACGTACA 97250731 Query 269016 T 269016 | Sbjct 97250732 T 97250732 >seq2 Length=147128157 Score = 116 bits (128), Expect = 9e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 127698189 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCTGCTATATTTTGG 127698130 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||||| |||||||| || ||| | || ||||| || Sbjct 127698129 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 127698070 Query 269258 GA 269259 || Sbjct 127698069 GA 127698068 >seq35 Length=75253249 Score = 89.7 bits (98), Expect = 1e-12 Identities = 175/257 (68%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132 |||| |||| || | ||| ||||||||||| | ||| |||||| | || || |||||| Sbjct 59006040 CAGTGAATACTCCACACGGATTATACTACAGTCAAGGATTGAAGGAGAGACAGGTGGAAT 59005981 Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAG--GAAGTAGTTGCTTTCCACGC 174190 ||||||| ||| |||||| |||| | || |||| || || | | ||||||| Sbjct 59005980 TTTCAGCACTTTCCCATTCCAGGTTTCTGTTTTGCCAGATGACAAAGAT--TCTCCACGC 59005923 Query 174191 GATGAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTATT 174250 || || ||| | | | |||| ||| || |||| | || |||||||| |||| || Sbjct 59005922 AGGTTGGCAACAAGCTGTTTGACTTCCTTCATTTTTCCCTTAGCATAAAATGCCTGTGTT 59005863 Query 174251 TGGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAACT 174310 ||||| || | || |||| || |||| || || || ||||| || |||| Sbjct 59005862 TGGTAAATGGCTGCCTTTGGCACCACCACACGGGAAGAGCAGTTCTCAATCTCAGCAAAG 59005803 Query 174311 ATCCTAACGTATTCACC 174327 ||| || ||||||| Sbjct 59005802 ATCTGAATTGATTCACC 59005786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151362020847928