Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq10 138 2e-27 seq21 125 1e-23 >seq10 Length=30184877 Score = 138 bits (152), Expect = 2e-27 Identities = 220/312 (71%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | ||| Sbjct 10355239 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 10355180 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||||||||| | ||| || |||||||| || |||||||| | || | Sbjct 10355179 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTGCTTGGCTTCCAGTACTCAGGTG 10355120 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||| || || |||| || ||||| ||||| ||||| || || | || | || Sbjct 10355119 AGCATATTGTATTTCCCATCAGTCCTTTCAGGGAGAACGGTGCGCCAATTTCTACCATTG 10355060 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCC 8917 | ||||| |||||||| || | |||||||| || ||||| || | |||| ||| Sbjct 10355059 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 10355001 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976 | ||| || |||||||| ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 10355000 ATAGCATCTATGTCTCCATAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 10354941 Query 8977 TTTATTAATAAA 8988 ||||| || || Sbjct 10354940 ATTATTGATGAA 10354929 Score = 113 bits (124), Expect = 6e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || ||||| || | || || ||| ||| || ||||| || |||||| Sbjct 10353251 ATGAGTCTTGTAGTCTGGAATAACTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAAG 10353192 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || |||| ||||| || || ||||| || || || |||||||| || || || Sbjct 10353191 ATGTCACAGACTCGATTGTGCTCTCTCAGCCATATTGTTGCATACATCATTAGGCCTGGG 10353132 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| |||||| |||| || || |||| | ||| | || || || | ||||| Sbjct 10353131 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGG 10353072 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | | || ||| || || | ||| ||||||||||| || ||||| ||| Sbjct 10353071 TAGATCATCTCTGCTTGAGTATCCTTCACTGTGGGTGGATACATTTCTCCATCAATCATC 10353012 Query 9862 TG 9863 || Sbjct 10353011 TG 10353010 >seq21 Length=10368520 Score = 125 bits (138), Expect = 1e-23 Identities = 206/297 (69%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 ||||||| | |||||||| || |||||| || || || || | | ||| Sbjct 8616526 GGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTTCAGTGATGCCG 8616467 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||||||| | || || |||| || ||||| ||||| |||||||| |||||| Sbjct 8616466 TCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTACTCCGGGG 8616407 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| | | || || || || ||||| || || || | ||| | |||| Sbjct 8616406 AGCAGATGGGGTTCCCAAGAAGTCCCTTCAGTGAAAATGGGGCACCAATCTCCACCATGC 8616347 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| ||||||| |||| || || | || || || | || ||||||| Sbjct 8616346 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAAAACTCCA 8616287 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||| || |||||||| || || || || || || || | |||| ||||||| Sbjct 8616286 GAGCATCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTCCTCCTCTCCTG 8616230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708502959723040