Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 132 6e-26 seq1 96.9 4e-15 seq3 89.7 6e-13 >seq2 Length=147128157 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 127698066 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 127698125 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| | ||| ||||| || ||||||||||| ||||| ||||||||||||| Sbjct 127698126 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 127698185 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 127698186 CAACCACTCTCTCACC 127698201 >seq1 Length=194437802 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| || || || ||||| || || |||||| ||| | || ||||| || ||||| | Sbjct 192634931 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCGATGTGGATGT 192634990 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || || ||||||||||||||||| |||||||| ||||| || | ||| | | Sbjct 192634991 TGAGAGACTGGCTCTGATCGATGAAGGCTCCTCTGTCTGCTGCCATCTTGAGGATAATTT 192635050 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATA 62209 | || | || ||||| | || ||||| Sbjct 192635051 TCTGGGAGATCTCCCACACCGTCTTATA 192635078 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 |||| ||||||||||||||||||||||| || || | || || ||||||| | || Sbjct 192642977 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGGGCGAAGAAAAGGTCTCTGGCACGCTGC 192643036 Query 63276 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 || || || || || ||||| |||||| || || ||| | | || || |||||||| Sbjct 192643037 TCTTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAGGTGCCACGG 192643095 Query 63335 TTCCAAGTATATGGCCATAACTCCAGG 63361 ||||| ||| ||||| | | | ||||| Sbjct 192643096 TTCCAGGTAGATGGCAAAAGCCCCAGG 192643122 Score = 82.4 bits (90), Expect = 1e-10 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || || || ||||||| || || ||| |||||||| || || || | ||||||||| Sbjct 192639326 TAGGTTTCATAGGGTCCTTGCTCCTGAGCGAGTTCACAGCTGGCTTCCAGAGCACCGTAA 192639385 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 |||||||| || ||||||| || || || || || || |||| ||||| || | Sbjct 192639386 TAAATGGTCTCAAAGATCTGCTGGTTCAGGCGCTGGGCCTCGGGGCTTTCAAAGGGGAAC 192639445 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746 | | || || || || || || | || || || |||||||| || || Sbjct 192639446 CTCATCAGGATGAAGGCATCAGCCAGGCCCTGCACGCCAATACCAATGGG 192639495 >seq3 Length=112045409 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 33556 TCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 33615 || ||| |||||||| || || || || | ||||||||||||||| ||||| || ||| Sbjct 97250747 TCTTTAGAATCTTTAATGTACGTGTCAATGAGAAGACTATACATTTCTGAATGTATATTT 97250688 Query 33616 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33675 || ||||| ||||| || || |||||||| | || || || || || |||||| || Sbjct 97250687 TCCATGGCTATCTGGAAGCCATAGAAACAACGCGCTTCTGTGATTTGCACTTCTTGACTG 97250628 Query 33676 AATCGTTCCGCC 33687 || || ||| || Sbjct 97250627 AACCGCTCCACC 97250616 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 97253690 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 97253631 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 |||| || || || |||||||||||||| ||||| Sbjct 97253630 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 97253596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622927997652560