Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq23 102 7e-17 seq19 84.2 2e-11 >seq23 Length=10219231 Score = 102 bits (112), Expect = 7e-17 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || || ||||||||||| || ||||||||||| | || ||| ||||| Sbjct 6724564 CAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT----GCGTC 6724509 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| ||| ||||| ||| | || |||| ||| || || ||| | ||| || | Sbjct 6724508 CATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCT 6724449 Query 16839 TGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGA 16898 |||| ||| | |||||| | | | ||||| | |||||| || | ||||| Sbjct 6724448 TGTCTTGAATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGA 6724389 Query 16899 TGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||| || || ||||| || || ||||| |||||||| || Sbjct 6724388 TGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 6724349 >seq19 Length=13198683 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||||||||| || ||||||||||| | || ||| |||| Sbjct 4747635 CAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 4747576 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| || || || | ||| || ||||| Sbjct 4747575 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 4747516 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | || || | ||| ||| |||| ||||||| Sbjct 4747515 CTGGATCTTGGC--CTTGACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATG 4747458 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || || || || || || || |||||||| ||| Sbjct 4747457 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGTTG 4747419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405075825333340