Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 109 1e-18 seq2 84.2 4e-11 >seq1 Length=194437802 Score = 109 bits (120), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 244321 CCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT 244380 ||| |||||||| || ||||||||||| ||||| || | ||| || || | Sbjct 192639301 CCCTTTGCTGACAGGAGAACCCTCGTAGGTTTCATAGGGTCCTTGCTCCTGAGCGAGTTC 192639360 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC- 244439 |||||| | || || || |||| || |||||||| |||||| || ||||| | ||| Sbjct 192639361 ACAGCTGGCTTCCAGAGCACCGTAATAAATGGTCTCAAAGATCTGCTGGTTCA-GGCGCT 192639419 Query 244440 GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 |||||| | || ||||||| | ||||| |||||| | || ||||| ||||||| Sbjct 192639420 GGGCCTCGGGGCTTTCAAAGGGGAACCTCATCAGGATGAAGGCATCAGCCAGGCCCTGCA 192639479 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||| || || ||||| | ||| || |||||||||| Sbjct 192639480 CGCCAATACCAATGGGCCGGTGGCGTCTGTTGGAGCG 192639516 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||| ||||| || || ||||||||||| ||| ||||| |||| | |||| Sbjct 192642977 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGGGCGAAGAAAAGGTCTCTGGCACGCTGC 192643036 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| |||||||||||| | | || | ||| ||||||| ||| | |||||| || Sbjct 192643037 TCTTCCTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGGTGCCACGGT 192643096 Query 245123 TCCATGTAGA 245132 |||| ||||| Sbjct 192643097 TCCAGGTAGA 192643106 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| || || | |||| ||||| ||| ||| || ||||| ||| Sbjct 192636929 ACCTGAAACTCTCCCGAAAGGACTCTGCGCGTGTAGATGTTACTGGTGTAGGGCTCAATG 192636988 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 || |||||||||| ||||| || ||| ||||| |||||||| || | || || Sbjct 192636989 GATTCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATGGGGGAAAGGAGAAGG 192637048 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||| || || || | ||| Sbjct 192637049 CTGTTTCTGACACCATACCT 192637068 >seq2 Length=147128157 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| | || || Sbjct 127698201 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCT 127698142 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||| | || ||||| || ||||| Sbjct 127698141 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 127698082 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 127698081 ATTAGCAGAGATGAGG 127698066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944310090744160