Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq10 127 3e-24 seq21 98.7 1e-15 >seq10 Length=30184877 Score = 127 bits (140), Expect = 3e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || || || || |||||||| ||| |||| ||||| || || ||||| | | || ||| Sbjct 10353242 GTAGTCTGGAATAACTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAAGATGTCACAG 10353183 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || | ||||| |||||||||||||| || || |||||||||| || || || || ||| Sbjct 10353182 ACTCGATTGTGCTCTCTCAGCCATATTGTTGCATACATCATTAGGCCTGGGACCAAGCCA 10353123 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | ||| || | ||| |||| | || || || | || | || | ||| Sbjct 10353122 AACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGGTAGATCATC 10353063 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | | || || || || || ||||| ||||||||||| || ||||| | ||| Sbjct 10353062 TCTGCTTGAGTATCCTTCACTGTGGGTGGATACATTTCTCCATCAATCATCTG 10353010 Score = 120 bits (132), Expect = 4e-22 Identities = 204/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 10355239 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 10355180 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | || | Sbjct 10355179 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTGCTTGGCTTCCAGTACTCAGGTG 10355120 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||| || || |||| || ||||||| ||| ||||| || || | || | || Sbjct 10355119 AGCATATTGTATTTCCCATCAGTCCTTTCAGGGAGAACGGTGCGCCAATTTCTACCATTG 10355060 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || | || ||||| || | | ||| | || ||||| | Sbjct 10355059 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTACAAGAAGGCCTGGATACAGTTCCA 10355000 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||| | || ||||| || || || || ||| Sbjct 10354999 TAGCATCTATGTCTCCATAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCT 10354944 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || ||||||||||| | ||| || | | || || | | ||| ||| ||||| Sbjct 10354430 ATAGAATTGTTGTAGAGGAACTGCTGGAAAGTGTATTCCTGGTCATGTATCTGAAAAGTG 10354371 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| |||| || |||||||| || || || |||||||||||| Sbjct 10354370 TCAGGCAGAAGTGGGTGCCAGTGGTACAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 10354311 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 10354310 TATTGAAAACGCTGGT--TGAACAGAAGCTCAGGATCAAACTTCAGTTTGAAGTGGTAGC 10354253 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | ||||| || || Sbjct 10354252 CACTCAAGTGCTGCACGTA 10354234 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || | ||||| ||||| | || |||| |||||| || || ||| || Sbjct 10350514 CTTACGCGTTGTACAGTTTTCCCCATAATAGCCTGTCCTCGTACAGTCACATTCATACCG 10350455 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||| || | |||||||| || |||| ||||| |||||| | || ||||||||||| Sbjct 10350454 ATCAAATCCTGCTGTCATGCACACACCTCTGTTCTGACACGGGAGGGAGCAGCAAGGGTT 10350395 Query 10960 GGCTGCAAT 10968 ||||| ||| Sbjct 10350394 GGCTGGAAT 10350386 Score = 86.0 bits (94), Expect = 9e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| || | || | ||||| | |||||| | || ||| |||| Sbjct 10351944 TCTTACCCCATGGCCATAAGCTTTAGTGAAGCCAGGTCCTTTCTTGTGGTCTGTCTTAAA 10351885 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||||| || || ||||| || | || || | |||||||| || ||||| || || || Sbjct 10351884 GAATTGATGAGTGAAGTGCTGGGCAAAGAATGTGAACATCACATTTGTGCCTTGTGGGTC 10351825 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300 || ||||| ||||||| | || | ||| ||||||||| | ||||||| || || Sbjct 10351824 AGGAATAAATTTCCTCCGCAGCAAGAATTTCTCCACAATCAGCTTTGAATCTGGGAGCTC 10351765 Query 10301 CGCCTTACCT 10310 | ||||||| Sbjct 10351764 CTTCTTACCT 10351755 >seq21 Length=10368520 Score = 98.7 bits (108), Expect = 1e-15 Identities = 201/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | ||||||| |||||| ||| || | ||| || | | ||| | Sbjct 8616526 GGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTTCAGTGATGCCG 8616467 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || ||||| || || || | || || ||||| ||||| ||||||||| |||||| Sbjct 8616466 TCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTACTCCGGGG 8616407 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| | | || || |||| ||||| || || || | ||| | |||| Sbjct 8616406 AGCAGATGGGGTTCCCAAGAAGTCCCTTCAGTGAAAATGGGGCACCAATCTCCACCATGC 8616347 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || || ||| | ||| | ||||| || | | || || | || | || | Sbjct 8616346 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAAAACTCCA 8616287 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||| || | ||| ||||| || | |||| ||| || || |||||| ||| ||| || Sbjct 8616286 GAGCATCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTCCTCCTCTCCTGCA 8616228 Score = 86.0 bits (94), Expect = 9e-12 Identities = 166/239 (69%), Gaps = 12/239 (5%) Strand=Plus/Minus Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT--ATGC 9544 ||||| ||||| ||||||| | ||| || ||||| | |||| | | ||| ||| Sbjct 8615402 ATGAGCATGGAGGTGTTGTAGAGGAACTGCTCGTAGCTGTACTCCTG--CCCCTGGATGG 8615345 Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 || ||||||| ||| |||||| ||||||| |||||||| |||| || | Sbjct 8615344 TGAAGGAGTCAGGCATCAGCCCGTGCCAGTGGTAGAGCTGGTTGAACTCCACCGCGATGC 8615285 Query 9605 GGTTCTGGTACTGAAAG-GCGGTACCGAACAGTAACTCCGGGTCAAAGATTAG---CTGG 9660 | ||| ||||||| || || | |||||||| | ||| ||||| || | || | || Sbjct 8615284 GATTCCGGTACTGGAACTGCTGC-CCGAACAGCAGCTCAGGGTCGAACTTGAGGCTCAGG 8615226 Query 9661 AAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||| |||||||||| ||||||||||| | | || | || || ||||| ||||| Sbjct 8615225 AAGT---ACCCGCTGAGGTGCTGGACATAGTCTTCAATGACGATCTTGATGGTCTCCCC 8615170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723705691084400