Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq9 307 1e-78 seq28 187 3e-42 seq3 82.4 1e-10 >seq9 Length=61178980 Score = 307 bits (340), Expect = 1e-78 Identities = 1042/1603 (65%), Gaps = 44/1603 (3%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || || || ||||| ||||| ||||| || ||||| | Sbjct 54497551 TTCATCCTCTGCTTTGTATTTCTCTGCTTCTTGCACCATACGGTCAATATCATCTTT-GC 54497609 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||| ||||| || || || ||||| | ||| || | ||| || Sbjct 54497610 TAAGGCGACCCTTGTCATTGGTGATGGTTATCTTGTTCTCTTTGCCTGTACTCTTGTCCA 54497669 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 |||| || || ||||| |||||||| ||||| | || || | || | || || || Sbjct 54497670 CAGCGCTGACGTTCAAGATACCATTAGCATCTATGTCAAAAGTGACCTCGATCTGAGGGA 54497729 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || | ||||| | || || ||||||| ||||| | || || || |||| ||| Sbjct 54497730 CTCCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCT 54497789 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTG 6864 ||| | | | ||||||||||| || | | | | ||| || || || ||| Sbjct 54497790 TCGTCATAGCCCTCTCACCTTCATACACCTGGACTAGGACACTGCTC--TGGTTGTCTGA 54497847 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 || | |||| | || || || | ||||| || || || | | || | | Sbjct 54497848 GTAGGTGGTGAAGGTCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGC 54497907 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 ||||| | ||||| || || | || || ||||| || || |||||||| || | Sbjct 54497908 TGTCATCACGCCACCAGCTGTCTCAATGCCCAGGGACAGGGGGGTGACGTCCAACAGGAG 54497967 Query 6985 CAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCC 7044 ||| || || ||| || | || ||| | | ||| || ||||| || | || || Sbjct 54497968 CAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCTGCACC 54498027 Query 7045 GTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATC 7104 || || || |||||||| || || || | || || || ||||| || || || | || Sbjct 54498028 ATAAGCAACAGCCTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTC 54498087 Query 7105 CGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATT 7164 | || || | ||| || || ||||| || || || || || || | ||||| || | Sbjct 54498088 CTGTAGCAACTTTTGGATCTTAGGGATACGAGTGGAGCCCCCCACAAGCACGATCTCCTG 54498147 Query 7165 CACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACA 7221 | | || |||| ||| | || || || | ||| || || || |||| ||| Sbjct 54498148 GATCTGGCCCTTGTCGAGCTTGGCATCACGCAGGGCTTTCTCCACTGGCTCCAGGGTACC 54498207 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 |||||| | || | || |||||||| || ||||| || ||||| || ||||| Sbjct 54498208 ---ACGGAAGAGATCAGCATTGAGCTCCTCAAAGCGGGCACGAGTGATGGAGGTGTAGAA 54498264 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC-- 7339 |||| ||| ||| | | || ||||| |||||| | | ||| ||| ||||| | Sbjct 54498265 GTCAATGCCCTCGAAGAGGGAGTCAATCTCAATGCTGGCTTG---CGTGGAAGAGCTCAG 54498321 Query 7340 -GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || ||||| || | |||||| || || || | || | | || ||| || || | Sbjct 54498322 AGTACGCTTCGCCCTCTCACAAGCTGTACGCAGCCGCCTCACTGCTCGCTTATTGCCAGC 54498381 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 ||| || ||| || ||||| || |||||||| || || | | || || Sbjct 54498382 AATGTCACGCTTGTGCTTACGCTTGAACTCTTCTACAAAATGGTTCACCATCCTGTTGTC 54498441 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 || || || ||||||| ||| || ||||| || || | || || |||||||| || | Sbjct 54498442 AAAGTCCTCCCCACCCAGGTGAGTGTCCCCAGCTGTGGACTTCACCTCAAAGATGCCATC 54498501 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||||| | | | || |||||||| || || || |||| |||||| ||||| || || Sbjct 54498502 CTCAATGGTAAGGATGGATACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATT 54498561 Query 7579 CGTATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | | || | | | ||||| || | || || || ||||| || || || || Sbjct 54498562 CTTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCAATAGCAGCTGCAGTGGG 54498621 Query 7633 TTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 || || |||||||| | ||| || ||||||| || || | |||||||| || || | Sbjct 54498622 CTCGTTGATAATACGCATCACA-TTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCT 54498680 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 | || || ||||| |||||||| || || || || | || || | | || || || | Sbjct 54498681 GGCGCTGGGAATCATTAAAGTAAGCAGGCACTGTGATAACAGCATTCTGTACCTTTTTCC 54498740 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | ||||| | || || || || ||||| ||||| || ||||| || ||||| || | Sbjct 54498741 CCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG 54498800 Query 7812 CCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870 | | | || ||| | || || || | || || | | | |||| || || || Sbjct 54498801 G-GAAGAAGGTCTTCATCTCGCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CA 54498853 Query 7871 CCGGGGATAACCTTAT---ACGACCAATCTTTCATATCGTCTTGGACCTGTTGG-TCCGA 7926 || | ||| | | | ||| | ||||| || || || ||| || || Sbjct 54498854 CCCTCATTCACCACACGGAAGGGCCAGTGCTTCATGTCCGACTGCAC-TGTGGGGTCATC 54498912 Query 7927 AAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGT 7986 | |||| | ||||| |||||||| |||||||| | ||||| ||||||||||||| Sbjct 54498913 ATACTTGCGGCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATGGCCAC 54498972 Query 7987 TTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGA 8046 ||||||||| || || |||||||| || || || || || || || || || || | Sbjct 54498973 TTGGTTCTTGGCAGCATCCCCGATGAGGCGCTCCGTA---TCGGTGAAGGCAACATA-GC 54499028 Query 8047 TGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGA 8105 |||| || || || ||||| ||||| || || || || || || | | | || ||| Sbjct 54499029 TGGGCGTGGTGCGGTTCCCCTGGTCATTGGCGATGATCTCCACTTTGCCATGCTGGAAGA 54499088 Query 8106 CGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | || ||||| |||||||| || || | ||| || ||||| || Sbjct 54499089 CACCCACGCAGGAATACGTGGTGCCCAGATCGATGCCGATGGC 54499131 >seq28 Length=6529417 Score = 187 bits (206), Expect = 3e-42 Identities = 369/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || |||| ||||| || || || Sbjct 3224511 GCACCATAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAACTCTTTGCCATTGAAG 3224452 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 |||| | || || ||||| |||||||| || || || || || |||| ||||| Sbjct 3224451 AAATCTTGCAGCAGTTTCTGAATCTTCGGGATGCGGGTAGACCCCCCAACCAGCACGATG 3224392 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | || || || | ||| | ||| || || | || || ||||| |||| Sbjct 3224391 TCATGGATCTGTGACTTGTCTAGCTTGGCGTCCCGCAGGGCCTTCTCCACAGGATCCAGG 3224332 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| | ||| || ||||| || || | ||| || ||||| ||| Sbjct 3224331 GTGCCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTGATCGATGTGTAG 3224272 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | ||||| |||||||| | | ||||| | || || | Sbjct 3224271 AAGTCAATACCCTCATAGAGAGAATCGATTTCAATACTGGCTTGTGTGCTAGATGACAGG 3224212 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| || |||||||| || || | ||||||| || | | ||| | Sbjct 3224211 GTACGCTTTGCACGTTCACACGCAGTACGAAGGCGACGAACTGCTCTCTTGTTCTCACTG 3224152 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 || |||||||| || || || || || || || |||||| | || | | | | Sbjct 3224151 ATGTCTTTCTTGTGCTTGCGCTTGAATTCGGCAATGAAGTGGTTGACCATGCGGTTG--- 3224095 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||||||| || || || || || | ||| || |||||||| || Sbjct 3224094 TCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 3224035 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | ||| ||||| || || ||||| || |||||||| || || ||| Sbjct 3224034 TCTTCAATAGTCAGAATCGACACATCGAAGGTGCCACCTCCAAGGTCAAAGATAAGAACG 3223975 Query 7577 TTC 7579 ||| Sbjct 3223974 TTC 3223972 >seq3 Length=112045409 Score = 82.4 bits (90), Expect = 1e-10 Identities = 106/145 (73%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 115358 CTTGGTGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGGAAGTA 115417 |||| | | ||||| |||||| ||| |||||||||||| |||| | || || | || Sbjct 97252402 CTTGATTCTTACCT-CATCTCTACTGATGAGTTCATTAGAAAAAGTGAGCCCAGGCATTA 97252344 Query 115418 ACCCTCTCTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAA 115477 | ||||| || || | ||||||||| | |||| || ||||||||||| ||||| | Sbjct 97252343 AGCCTCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAATATTCCTTCCA 97252284 Query 115478 CACACGCAAAGGCTAATAAACGTTC 115502 | ||||| |||| || |||||| Sbjct 97252283 CTGCTGCAAATGCTACTACACGTTC 97252259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635113222031440