Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 seq2 118 1e-21 >seq3 Length=112045409 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||| | |||||||| | Sbjct 97252391 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCT 97252332 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||| |||||||| ||||| ||||||||||| | Sbjct 97252331 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAATATTCCTTCCACTGCTGCAAATG 97252272 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 97252271 CTACTACACGTTCTCC 97252256 >seq2 Length=147128157 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 18971 CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCA 19030 |||||| | | |||| ||||| || || | |||||| || || || || |||||||||| Sbjct 127698054 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCA 127698113 Query 19031 GTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTA 19090 | || || || || | ||| ||||||| ||||||||| || |||||||| || ||||| | Sbjct 127698114 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 127698173 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCC 19118 |||| ||||| ||||| | ||| || || Sbjct 127698174 CTGCAGCAAAGGCAACCACTCTCTCACC 127698201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562091472996240