Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq28 116 3e-20 seq9 114 1e-19 >seq28 Length=6529417 Score = 116 bits (128), Expect = 3e-20 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||||||||| |||||||| ||||| || || || || || ||||||| Sbjct 3223714 ATGCTGTAGTCACTGTACCAGCCTATTTTAACGACTCCCAGCGGCAGGCCACAAAAGATG 3223773 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || ||||| || || ||||||||||| || || |||||||| Sbjct 3223774 CTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCGACAGCTGCTGCTA 3223833 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 3223834 TAGCTTATGGTCTGGACAA 3223852 Score = 87.8 bits (96), Expect = 1e-11 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||| | || ||||| ||| ||||||||||| | ||| | || || Sbjct 3222749 AGCTGTTGGTATCGATCTCGGCACCACCTATTCCTGTGTTGGTGTGTTCCAACACGGGAA 3222808 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||||||||| || |||||||| || || ||| || || ||||||| Sbjct 3222809 GGTGGAAATCATTGCCAATGACCAGGGTAACAGGACCACGCCAAGCTACGTCGCTTTCAC 3222868 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 || || || || | |||||||| || || | |||| Sbjct 3222869 AGATACAGAGAGGTTGATCGGTGATGCTGCCAAGAACCAAG 3222909 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || |||||||| || || ||||| |||||| Sbjct 3225405 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 3225464 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || |||||||| ||||| ||||| Sbjct 3225465 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 3225496 >seq9 Length=61178980 Score = 114 bits (126), Expect = 1e-19 Identities = 362/548 (66%), Gaps = 15/548 (3%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | || ||||| ||| || || ||||| | || |||| ||| Sbjct 54499131 GCCATCGGCATCGATCTGGGCACCACGTATTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 54499072 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| || || ||| | || || || |||||| | ||||| Sbjct 54499071 GTGGAGATCATCGCCAATGACCAGGGGAACCGCACCACGCCCAGCTATGTTGCCTTCACC 54499012 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACC 550168 || || || | | | || ||||| || || | |||| ||| || || || ||| Sbjct 54499011 GATACGGAGCGCCTCATCGGGGATGCTGCCAAGAACCAAGTGGCCA-TG--AACCCCACC 54498955 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || || |||||||| || ||| | || || | | | | |||| | || || ||| Sbjct 54498954 AACACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAG 54498895 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 | || |||||||| ||||| |||| | || |||| ||| || || | | | | Sbjct 54498894 TCGGACATGAAGCACTGGCCCTTCCGTGTGGTGAATGAGGGTGGCAAGCCCAAGGT-GCA 54498836 Query 550289 GCT--ACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTT 550345 | | | | || | || || | || | ||| ||||| | || || ||||| Sbjct 54498835 GGTGGAGTACAAGGGCGAGATGA-AGACCTTCTTC-CCAGAGGAGATCAGCTCCATGGTG 54498778 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGA-TGCAGT 550404 | | || ||||| | | || || | | | || || ||| ||| || ||| || Sbjct 54498777 CTCACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGAAA-AAGGTACAGAATGCTGT 54498719 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 || || || || || || |||||||| || || || || || || ||||||||||| Sbjct 54498718 TATCACAGTGCCTGCTTACTTTAATGATTCCCAGCGCCAGGCCACCAAAGATGCTGGCAC 54498659 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 || |||| |||||||| | ||||||||||| || || ||||| ||||| |||| || Sbjct 54498658 CATCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACTGCAGCTGCTATTGCCTA 54498599 Query 550525 TGGACTTG 550532 ||| |||| Sbjct 54498598 TGG-CTTG 54498592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029165586798340