Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq35 129 1e-24 seq32 127 4e-24 seq5 93.3 8e-14 seq1 93.3 8e-14 >seq35 Length=75253249 Score = 129 bits (142), Expect = 1e-24 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| ||| ||||||| |||||||||||||| |||||||| ||||| || | ||||||||| Sbjct 53156193 CTTCAGCGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCTCCGGCGGCA 53156134 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| || | ||||||||| |||| ||| || |||||||| | ||| |||||| Sbjct 53156133 CTTGGAGGCCGCGATGCGGTTCCGAAGTCGCTTGCGCTCCGCCTTCAGGCGCTCCTGGCT 53156074 Query 241609 CTCCATGTCGATCGGAGAC 241627 |||| ||| | ||| ||| Sbjct 53156073 CTCCGCGTCCAGCGGCGAC 53156055 >seq32 Length=5069901 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| ||||||||||| || || || | | ||||| || ||| Sbjct 4026183 AGCACCTTCTGCTTGAGCTGGGCCACCTGCTCGCGGAGCAGGCTGGCGGTGGAGGCCAGC 4026124 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| ||||||||||| || | |||||| |||||| Sbjct 4026123 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGGCGGGAGATGCGCTCCAGT 4026064 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||| ||| || | |||||||| || | || || ||||| ||| Sbjct 4026063 TTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCTCAGCCGTTTCCGCTCCGCTTTG 4026004 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 4026003 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 4025971 >seq5 Length=97484820 Score = 93.3 bits (102), Expect = 8e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 38965 GCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTAC 39024 ||||||| | |||||||||||| |||||||| || |||||||| ||||||||| ||| | Sbjct 20615727 GCTCCCAGCGGTTGGCGGAGAACAGCAGGTGCACGGCGTGGTCCTCCAGCTCCCTCTCCC 20615668 Query 39025 TCTCCAGGTACGAGCTGATCA 39045 || ||||||| | |||||||| Sbjct 20615667 TCGCCAGGTAGGCGCTGATCA 20615647 >seq1 Length=194437802 Score = 93.3 bits (102), Expect = 8e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 ||||||| ||| || || || || | ||| || ||| ||| ||||| |||| | | | Sbjct 192642977 ACTCTCTTCATAAAGAGATCAGGAATCCAGAGGGCGAAGAAAAGGTCTCTGGCACGCTGC 192643036 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || ||| |||| ||| || | || ||||| |||||||||||| ||||||||| Sbjct 192643037 TCTTCCTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAGGTGCCACGGT 192643096 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 192643097 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 192643127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931504085501440