Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq28 120 2e-21 seq9 111 1e-18 seq23 105 4e-17 seq19 89.7 3e-12 seq5 89.7 3e-12 >seq28 Length=6529417 Score = 120 bits (132), Expect = 2e-21 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 |||||| |||| ||| | ||||| ||||| |||||||| || || || || || || || Sbjct 3223707 GTAACTAATGCTGTAGTCACTGTACCAGCCTATTTTAACGACTCCCAGCGGCAGGCCACA 3223766 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| |||||||| || ||||| | || ||||| ||||| || ||||| Sbjct 3223767 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCGACAGCT 3223826 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || | ||||||||||| || ||||| Sbjct 3223827 GCTGCTATAGCTTATGGTCTGGACAAGAA 3223855 Score = 98.7 bits (108), Expect = 6e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 3225405 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 3225464 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 3225465 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 3225496 >seq9 Length=61178980 Score = 111 bits (122), Expect = 1e-18 Identities = 329/500 (66%), Gaps = 8/500 (2%) Strand=Plus/Minus Query 474381 ATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTT 474440 |||| ||||| || || || ||||||||||| || || | || || || |||||| Sbjct 54499079 ATGGCAAAGTGGAGATCATCGCCAATGACCAGGGGAACCGCACCACGCCCAGCTATGTTG 54499020 Query 474441 CTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATC 474500 | || || || || || | || || || |||||||| || | |||| || || | Sbjct 54499019 CCTTCACCGATACGGAGCGCCTCATCGGGGATGCTGCCAAGAACCAAGTGGCCATGAACC 54498960 Query 474501 CTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTG 474560 | || || || |||||||| || | | || || || || | |||||| |||| | Sbjct 54498959 CCACCAACACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAG 54498900 Query 474561 TCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATA 474620 | || || || ||| || ||||| || ||| | |||| ||||| || || | Sbjct 54498899 TGCAGTCGGACATGAAGCACTGGCCCTTCCGTGTGGTGAATGAGGGTGGCAAGCCCAAGG 54498840 Query 474621 T--AGAAGCAATACACGCAGGTGAAACTAA-ACAATTTTCACCGGAACAAATTTCTTCAA 474677 | || | | |||| | || || | || || | ||| || || | || || | Sbjct 54498839 TGCAGGTGGAGTACAAG--GGCGAGATGAAGACCTTCTTC-CCAGAGGAGATCAGCTCCA 54498783 Query 474678 TGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGAT 474736 |||| | |||| ||||| | | || ||| | ||||| || || | ||| || Sbjct 54498782 TGGTGCTCACCAAGATGAAGGAGATTGCTGAGGCC-TATCTGGGGAAAAAGGTACAGAAT 54498724 Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || || || || || || || ||||||||||| || || || || || |||||||| Sbjct 54498723 GCTGTTATCACAGTGCCTGCTTACTTTAATGATTCCCAGCGCCAGGCCACCAAAGATGCT 54498664 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | || | || |||||||| | |||||||| || || || || ||||| || || Sbjct 54498663 GGCACCATCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACTGCAGCTGCTATT 54498604 Query 474857 GCTTATGGTCTTGATAAGAA 474876 || ||||| | || ||||| Sbjct 54498603 GCCTATGGCTTGGACAAGAA 54498584 >seq23 Length=10219231 Score = 105 bits (116), Expect = 4e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||||| || || | || ||||| |||||||| |||||||| Sbjct 6724507 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTT 6724448 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||||||||| || ||| |||||| || ||| || | | |||||||| || Sbjct 6724447 GTCTTGAATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGAT 6724388 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 6724387 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 6724355 >seq19 Length=13198683 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||| |||||||| || || | || |||||||| ||||| ||||||||| Sbjct 4747577 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTG 4747518 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| |||||| || || |||||| || || || | ||| || Sbjct 4747517 TCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATG 4747458 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| ||||| || || Sbjct 4747457 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 4747426 >seq5 Length=97484820 Score = 89.7 bits (98), Expect = 3e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||||||||| ||| || | ||||| || || Sbjct 39676040 CCATCACGACCAGCTCTTCCAATTTCTTGATAATAGGATTCCATTTCCTTAGGGGCACCG 39675981 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || || | ||||| |||||| || |||||||||||||| | ||| || Sbjct 39675980 TAATGAATAACCATTCGGATATCTGCTTTATTGATGCCCATTCCAAATGCCACTGTAGCC 39675921 Query 627889 AC 627890 || Sbjct 39675920 AC 39675919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268073421294968