Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq35 271 9e-68 seq13 208 9e-49 >seq35 Length=75253249 Score = 271 bits (300), Expect = 9e-68 Identities = 660/992 (67%), Gaps = 11/992 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || ||| |||| ||||| || || || |||||| || || || | Sbjct 37793936 TGTGTCGCAAATATTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTATCAAACT 37793877 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| | || ||||||| || |||||| ||| |||| Sbjct 37793876 TATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCAGTTCAGGTCTCCTACCCCAAACA 37793820 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||||||||||| | || || || |||| || ||||| | || ||||| | ||||| Sbjct 37793819 CGCAGACGGAACGAACATGAACTCCACTGCACGGTGGGTAGGGCGCACCTTTAGACACGT 37793760 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | ||||| ||||||||||||| ||||||| ||| | ||| | |||||| || ||| | Sbjct 37793759 CTCCTTCAAAGTACTGCCACTTGACAAACCGGGCCAGCGCATTCATGTCAGAAACGTCAT 37793700 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 37793699 ACTTGT-CACTAGAAGAAACAGCACCTGGGACATCAGGGATTCTCTGAATTGTTGCCCAC 37793641 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| |||||||| | ||| || || || | |||| ||| Sbjct 37793640 AGGTACTCATCAGGGCTGTAAGTGTCCTTTGCCCACTCAATAAATTTGAGGATTTTGCTG 37793581 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | |||| || | |||| | || ||||| || || || || || || Sbjct 37793580 TTTTCTAATACGTACTCCACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 37793521 Query 160464 ATCG--GTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521 || | |||| | | ||| || | |||||| ||| ||||| ||| || | Sbjct 37793520 ATTGGAGTATTG--AGAGGTGGTAGCTGTTTGTCTATACCTGTGTTTTTCACTTTACCGT 37793463 Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCT 160581 || | | | | | || |||||||| || || | ||||| ||| || | Sbjct 37793462 CAACAATCTCATAGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTT 37793403 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 37793402 CCAAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTA 37793343 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701 |||||||| | || || | |||||| | || ||||| || | || | | Sbjct 37793342 TAGGAAAGTCCATGCCACAGAGGTTTATTAGATATTTCCAGTTTGAACTTCTTCTATAGA 37793283 Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761 | || ||||||||||||||||||||||||| | |||||| || || || || || ||| Sbjct 37793282 GATCTTTCATGCAATTAATATCTGCCTGCACCCTGCTCCATGAGGCATATACAACACTCT 37793223 Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAA 160821 ||| | |||| | |||||| ||||| ||||| || || ||||| ||| | | | | Sbjct 37793222 CTAACTGGCTGGATATAAAGACATTATCAAAACATGAGACTATTCCTTTCACAG-CTGTA 37793164 Query 160822 AGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAG 160880 | || | || | | ||||| ||| || || | ||| || | |||||||| || ||| Sbjct 37793163 AAAAAAGATTCTGGAGACTTTCTGTCAACATGGATGCAGTAAAAATTCTGAGGAGCATAG 37793104 Query 160881 ATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCT 160940 || | || || | || || | |||||| || || |||| | ||| || ||||| || Sbjct 37793103 ATTGATCTCAGAAGTCTGTCAAGCATCTCAATTTTGTGATAAACCACTATCGAGTAAGCA 37793044 Query 160941 ATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATA 161000 |||||||| || | || || || || | | | | |||||| | | ||||| | Sbjct 37793043 ATCGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTACTTCCTCATCTTGGTG 37792984 Query 161001 AAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| | |||| || |||||||| ||||| Sbjct 37792983 AAAGAGGCACAGTCTGCTGTCATGTTAATATA 37792952 >seq13 Length=20192527 Score = 208 bits (230), Expect = 9e-49 Identities = 606/924 (66%), Gaps = 32/924 (3%) Strand=Plus/Plus Query 160050 CGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTT 160109 ||||| || | || ||||| |||| |||| |||| || || |||||| || || Sbjct 4752536 CGCAGGTGCTTCTCGAGACACTGGATGGCGGCGTCGTCTACTTCGGTGTCGAACTTGTTG 4752595 Query 160110 GCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAG 160169 || || || ||||| | | | || |||||| ||| || ||||||||| | | |||| Sbjct 4752596 GCCAAGAGGTGGTGC---TGCCGCAGCATCCAGGCCACATCCCCGGACCCGTAGATGCAG 4752652 Query 160170 ACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT--CAC 160227 ||| || | |||| |||| |||||||| | ||||| || | || | | Sbjct 4752653 ACGCTGCGCTGGAAGCGGCCGGTGCAGGGCGGGTAGGGCGCTCCC--CGGCTGGTGTCGC 4752710 Query 160228 CTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATT 160287 | || ||||||||||||| || | | || | ||| | ||||||||| | | | | Sbjct 4752711 CGTCCAAGTACTGCCACTTGACCAGGCGGGGCAGCGCGTTCATGTCGGACAGCTGGAACT 4752770 Query 160288 TGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGT 160347 ||| | |||| ||||| ||||| ||||||||| || | || |||||||||| || Sbjct 4752771 TGTCGTTGTGGGGCACGGCGCCGGGCACGCCGGGCGCGCGGTTCAGCGTGGCCCACACGT 4752830 Query 160348 GTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-CTCCGATTAACC----T 160402 | |||||||||||||| |||||||| | ||| || | ||||| || || || Sbjct 4752831 GCTCGTCGGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACTGCTGCG-----CCGCGGG 4752885 Query 160403 GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAA 160462 |||| ||| ||||| ||| ||| | ||| | | | ||| |||||||| | ||| Sbjct 4752886 GTCCTCCAGCACGTGCTGCACGAAGGCCCGCGTCGCTGCGATGTAGGCGCTGCCCGTGAA 4752945 Query 160463 TATCGGTATGGGTATAGGCGGC-GTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521 || || ||| | |||||| | | ||||| || ||| | | | | | Sbjct 4752946 CATGGGCGAGGGGAGCGGCGGCGGCGGCTTTGCTGTGGCCG----TGCGGAGGATGACGT 4753001 Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGT--GCGGTGGCATGCGTTCCGT 160579 | ||| ||| | | |||||| | || ||||| || || | | | |||| Sbjct 4753002 GCTCCACTTGGTGGTGGTACTTCCAGCGCTCCTGCTTGTAAGCCGTCGGCTTC--TCCGA 4753059 Query 160580 CTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTT 160639 ||| | ||||| || | ||| | |||| ||| ||||| ||| ||||| Sbjct 4753060 CTCCATGCTGTTCTGCCCCTGCAGCACCTGCAGCGCACGGACCATCTCCGCGTTGGTCTT 4753119 Query 160640 GAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTC---GCGCTCAGGTC 160696 || || |||||||| ||||| ||| | ||||| ||| | | |||| | Sbjct 4753120 GATGGGGAAGTCGGTGCCGCAGGTGTTGAGGACGTAGCGCCAGGGCACGGGGCTC---TG 4753176 Query 160697 GTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTAC 160756 |||||||| |||||| || | || ||||||| ||| |||||| |||||||| || Sbjct 4753177 CAGCAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCGTACACCAC 4753236 Query 160757 GTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGC 160816 | |||| || |||||||| |||||||| ||| || | |||| || ||| || Sbjct 4753237 GCTCTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGGCGGCGATGGCCCGCACGGC 4753296 Query 160817 CAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGC 160876 | | ||| || || | ||||||||| ||||| || | |||||| || || Sbjct 4753297 CTGCTGGAAGGCGGCGGGGGCTTTGCTGTCCACGTGGACGCAGTAGACGTTCTGCGGGGC 4753356 Query 160877 GTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTA 160936 ||||| | | || | || |||||||||||| ||||| || ||||| || || ||||| Sbjct 4753357 GTAGAGAGAGCGCAGGAGCCGCTCGAACATCTCGATCTTGTGGTGGATGACCATGGAGTA 4753416 Query 160937 GGCTATCGGAAACTCGGTCTCCTC 160960 ||| || || || |||| |||||| Sbjct 4753417 GGCGATGGGGAAGTCGGCCTCCTC 4753440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577201407218160