Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq9 392 4e-104 seq28 206 3e-48 seq23 197 2e-45 seq19 176 6e-39 seq21 105 9e-18 >seq9 Length=61178980 Score = 392 bits (434), Expect = 4e-104 Identities = 1056/1598 (66%), Gaps = 39/1598 (2%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || |||||| | || || || || || || || ||||| | || ||| Sbjct 54499131 GCCATCGGCATCGATCTGGGCACCACGTATTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 54499072 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | |||||||| || ||||| || || || || |||||||| || Sbjct 54499071 GTGGAGATCATCGCCAATGACCAGGGGAACCGCACCACGCCCAGCTATGTTGCCTTCACC 54499012 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || ||||| || || || || || |||||||| | ||| Sbjct 54499011 GATACGGAGCGCCTCATCGGGGATGCTGCCAAGAACCAAGTGGCCATGAACCCCACCAAC 54498952 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || |||||||| || || ||||||| | || | ||| || Sbjct 54498951 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGTCG 54498892 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | || || || || || ||||| | | | | Sbjct 54498891 GACATGAAGCACTGGCCCTTCCGTGTGGTGAA---TGAGGGTGGCAAGCCCAAGGTGCAG 54498835 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || || | | || |||| ||| | || |||| || || || || |||||| | Sbjct 54498834 GTGGAGTACAAGGGCGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTGCT 54498776 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | ||||||||||||| ||| || | | |||| |||| || | |||| ||| | Sbjct 54498775 CACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGAAAAAGGTACAGAATGCTGTTAT 54498716 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || ||||||||||| | |||||| || || ||||| || || || |||| | || Sbjct 54498715 CACAGTGCCTGCTTACTTTAATGATTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 54498656 Query 195778 TGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 | || || || ||| | | |||||||| || || || || ||||| ||||| |||| Sbjct 54498655 CACTGGCCTTAA-TGTGATGCGTATTATCAACGAGCCCACTGCAGCTGCTATTGCCTATG 54498597 Query 195837 GTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 | |||||||||| | || | ||| || ||||| | |||||||| | || | Sbjct 54498596 GCTTGGACAAGAAAGGTACCCGGGCTGGAGAGAAGAATGTGCTCATCTTTGACTTGGGAG 54498537 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 | || || |||||||| || | || | ||||| | ||| || || || || ||| | | Sbjct 54498536 GGGGCACTTTTGATGTATCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCCA 54498477 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGT 196010 | ||||| || ||||| || ||||| || || || || | | | ||||| Sbjct 54498476 CAGCTGGGGACACTCACCTGGGTGGGGAGGACTTTGACAACAGGATGGTGAACCATTTTG 54498417 Query 196011 CTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTC 196070 || |||||| || ||| | ||| || ||| |||| ||| | || | | | Sbjct 54498416 TAGAAGAGTTCAAGCGTAAGCACAAGCGTGACATTGCTGGCAATAAGCGAGCAGTGAGGC 54498357 Query 196071 GGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCT---CTCTTCTACGGCTCAAACAA 196127 |||| | || || ||||| | || || || ||||| |||||| ||| ||| | | Sbjct 54498356 GGCTGCGTACAGCTTGTGAGAGGGCGAAGCGTACTCTGAGCTCTTCCACG---CAAGCCA 54498300 Query 196128 TGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCAC 196187 |||||||||| || | || || || ||||||||||| || | || || ||||| | Sbjct 54498299 GCATTGAGATTGACTCCCTCTTCGAGGGCATTGACTTCTACACCTCCATCACTCGTGCCC 54498240 Query 196188 GTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTA---TGGAACCTGTTGAACAAG 196244 | ||||| ||| | || ||||| | || | ||| |||| || || || ||| Sbjct 54498239 GCTTTGAGGAGCTCAATGCTGATCTCTTCCGTG---GTACCCTGGAGCCAGTGGAGAAAG 54498183 Query 196245 TACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGAT 196304 || ||||| || ||| | || ||| || | | || || || |||||||| || | Sbjct 54498182 CCCTGCGTGATGCCAAGCTCGACAAGGGCCAGATCCAGGAGATCGTGCTTGTGGGGGGCT 54498123 Query 196305 CAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAA 196364 | || ||||| || ||||| ||| || |||| |||||||||| ||||| | | Sbjct 54498122 CCACTCGTATCCCTAAGATCCAAAAGTTGCTACAGGACTTCTTCAATGGCAAAGAGCTCA 54498063 Query 196365 ACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTC 196424 |||| | ||||| || ||||| || |||||||||||||| || || || || ||||| Sbjct 54498062 ACAAGAGCATCAATCCAGATGAGGCTGTTGCTTATGGTGCAGCTGTGCAAGCAGCTAT-- 54498005 Query 196425 TCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCG 196481 |||| | | ||||| | | || || || ||||| || || | || || | ||| Sbjct 54498004 CCTCATG-GGAGACAAGTCTGAGAATGTGCAGGATCTGCTCCTGTTGGACGTCACCCCCC 54497946 Query 196482 TATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAA 196541 | |||||||| |||| ||||| ||||| || ||||| | || | | ||||| | Sbjct 54497945 TGTCCCTGGGCATTGAGACAGCTGGTGGCGTGATGACAGCTCTCATCAAGCGTAACACCA 54497886 Query 196542 CTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTT 196600 | ||||| || || | || ||| | || || || || || || | || |||| Sbjct 54497885 CCATTCCCACCAAACAAACGCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GTGTC 54497827 Query 196601 CATATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGA 196657 | | || || ||||||| |||| ||| || | ||||| ||| | | || || Sbjct 54497826 CTAGTCCAGGTGTATGAAGGTGAGAGGGCT---ATGACGAAGGACAACAACTTGCTGGGC 54497770 Query 196658 ACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGC 196717 | || || | ||||| || || | |||||| | || || || ||||| | || Sbjct 54497769 AAGTTTGACCTAACGGGCATCCCCCCAGCACCCCGTGGAGTCCCTCAGATCGAGGTCACT 54497710 Query 196718 TTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAA 196777 || || ||||| || ||||| || | ||||||| |||| ||||||| | | |||||| Sbjct 54497709 TTTGACATAGATGCTAATGGTATCTTGAACGTCAGCGCTGTGGACAAGAGTACAGGCAAA 54497650 Query 196778 TCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGT 196837 | ||||| || |||||||||||||| || ||| || || || ||||| ||| Sbjct 54497649 GAGAACAAGATAACCATCACCAATGACAAGGGTCGCCTTAGCAAAGATGATATTGACCGT 54497590 Query 196838 ATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 ||||| ||||| || || || |||| | ||| || || Sbjct 54497589 ATGGTGCAAGAAGCAGAGAAATACAAAGCAGAGGATGA 54497552 >seq28 Length=6529417 Score = 206 bits (228), Expect = 3e-48 Identities = 366/531 (69%), Gaps = 2/531 (0%) Strand=Plus/Plus Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 |||||||| || || ||||| || || ||||| || |||| | |||||||| ||| || Sbjct 3223982 ATCTTTGACCTTGGAGGTGGCACCTTCGATGTGTCGATTCTGACTATTGAAGATGGCATC 3224041 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGT 195994 || || || || | ||||| ||||| ||||| | ||||| ||||| || || || Sbjct 3224042 TTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTTTGACAACCGC 3224101 Query 195995 CTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAAT 196054 | || || || || || ||| || ||| | |||||||| || || || Sbjct 3224102 ATGGTCAACCACTTCATTGCCGAATTCAAGCGCAAGCACAAGAAAGACATCAGTGAGAAC 3224161 Query 196055 CCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCT 196114 || || ||||||| ||| | ||||| ||||||||||| || || || || || ||| Sbjct 3224162 AAGAGAGCAGTTCGTCGCCTTCGTACTGCGTGTGAACGTGCAAAGCGTACCCTGTCATCT 3224221 Query 196115 ACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACT 196174 | | ||| | | |||| || ||||| | | ||| || ||||||||||| ||| | Sbjct 3224222 AGCACACAAGCCAGTATTGAAATCGATTCTCTCTATGAGGGTATTGACTTCTACACATCG 3224281 Query 196175 ATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCT 196234 || ||| | || || ||||||||| | || |||| |||| | |||| ||| Sbjct 3224282 ATCACCAGAGCTCGCTTTGAAGAGCTGAATGCTGACCTGTTCCGTGGCACCCTGGATCCT 3224341 Query 196235 GTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTT 196294 || || | | || || ||||| ||| | || ||||| || | |||| || || || Sbjct 3224342 GTGGAGAAGGCCCTGCGGGACGCCAAGCTAGACAAGTCACAGATCCATGACATCGTGCTG 3224401 Query 196295 GTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAA 196353 || || || || ||||| || ||||||||||| | ||| | | || ||||||||| Sbjct 3224402 GTTGGGGGGTCTACCCGCATCCCGAAGATTCAGAAACTGC-TGCAAGATTTCTTCAATGG 3224460 Query 196354 TAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 ||||| || ||||| | ||||| || |||||||| || ||||||||||| Sbjct 3224461 CAAAGAGTTGAACAAGAGCATCAATCCTGATGAAGCTGTAGCTTATGGTGC 3224511 Score = 107 bits (118), Expect = 3e-18 Identities = 111/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || || |||||||| || || || | || || || || ||||| ||||| || | Sbjct 3223714 ATGCTGTAGTCACTGTACCAGCCTATTTTAACGACTCCCAGCGGCAGGCCACAAAAGATG 3223773 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 ||| | ||||| || || || ||| || ||||||||||||| || ||||| ||||| Sbjct 3223774 CTGGAACCATTGCAGGGCTCAA-TGTACTGCGAATTATCAATGAGCCGACAGCTGCTGCT 3223832 Query 195827 ATTGCTTATGGTCTGGACAAGAA 195849 || |||||||||||||||||||| Sbjct 3223833 ATAGCTTATGGTCTGGACAAGAA 3223855 Score = 86.0 bits (94), Expect = 8e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 196610 GTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTT 196668 ||||||||||||||||| | | || | ||||| ||| | | || || | || || | Sbjct 3225342 GTATATGAAGGAGAACG-TGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGAGCT 3225400 Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728 ||| || ||||| |||| ||||||||||| || |||||| | || ||| ||||| || Sbjct 3225401 GACCGGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGA 3225460 Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGAT 196788 || ||||| || || || || | |||| ||| ||| ||||||| | ||||| Sbjct 3225461 TGCCAATGGCATCCTGAATGTGTCTGCTGTGGATAAGAGCACTGGCAAGGAGAACAAGAT 3225520 Query 196789 TGTGATTACCAATGACAAGGG 196809 ||| || || ||||| || Sbjct 3225521 CACGATAACGAACGACAAAGG 3225541 >seq23 Length=10219231 Score = 197 bits (218), Expect = 2e-45 Identities = 171/212 (81%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||| ||||||||| | Sbjct 6724352 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 6724411 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||||||||| |||||||||||||| ||||||||| Sbjct 6724412 GACACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCCGATCAG 6724471 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || || || ||||||||||| ||||| |||| |||||| Sbjct 6724472 CAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACCCTGTCTGACTACAAC 6724531 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| ||||| ||||| || || Sbjct 6724532 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCT 6724563 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||||||||||||||| ||| | ||||| || || |||||||||||||| ||| | Sbjct 6724578 GTATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCA 6724637 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978 ||||| || || ||| | || |||||||| ||||| |||||||||||||| |||||| Sbjct 6724638 GTGACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGAT 6724696 >seq19 Length=13198683 Score = 176 bits (194), Expect = 6e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| ||||| || || |||||| | ||||| || | Sbjct 4747423 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAACCCAGT 4747482 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || |||| |||||||| || || |||||||||||||| || |||||| Sbjct 4747483 GATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4747542 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| ||||| || || ||||| |||| |||||| Sbjct 4747543 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4747602 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| ||||| || |||||||| | || ||||||| Sbjct 4747603 ATCCAGAAGGAGTCCACTCTCCATCTTGTTCTGCGCCTGAGGGGTGG 4747649 Score = 120 bits (132), Expect = 4e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || ||||| || ||||| ||| | Sbjct 4747651 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACACTGGAGGTCGAGCCCAGT 4747710 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || ||| | || |||||||| || || ||||| |||||||| ||||||||| Sbjct 4747711 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAG 4747770 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCT 172010 || | || || |||||||| || ||||| Sbjct 4747771 CAGAGGCTGATCTTTGCTGGCAAGCAGCT 4747799 >seq21 Length=10368520 Score = 105 bits (116), Expect = 9e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 196637 AAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGT 196696 ||||| || ||||| || |||||||| ||| |||| || || || |||| || | ||| Sbjct 9457815 AAGGACAATCATCTTCTGGGAACTTTTGATCTGACTGGAATCCCTCCTGCTCCTCGTGGT 9457756 Query 196697 GTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCT 196756 || ||||||||| | ||| ||| || ||||| | |||||||| || ||||||||| Sbjct 9457755 GTCCCACAGATTGAAGTTACCTTTGAAATAGATGTGAATGGAATCCTTCGTGTCACAGCT 9457696 Query 196757 GAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTT 196816 || ||||||| |||| || | ||||| ||||| ||||| || ||||| Sbjct 9457695 GAAGACAAGGGCACTGGGAACAAAAACAAGATCACAATTACAAATGATCAGAATCGGCTA 9457636 Query 196817 TCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGT 196859 | || || ||||| | |||||| | ||||| || |||| Sbjct 9457635 ACACCAGAAGAGATTGAGAGGATGGTTAATGATGCTGAGAAGT 9457593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657842121391520