Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 176 6e-38 seq1826 95.1 1e-13 seq3 93.3 5e-13 >seq1 Length=194437802 Score = 176 bits (194), Expect = 6e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 48776397 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 48776338 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 48776337 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGTTCGAAGA 48776278 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 48776277 TGTCGTTGACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 48776218 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 48776217 GCACCTGCTTCAGCACCTTGTA 48776196 Score = 176 bits (194), Expect = 6e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 48841606 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 48841547 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 48841546 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 48841487 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 48841486 TGTCGTTGACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 48841427 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 48841426 GCACCTGCTTCAGCACCTTGTA 48841405 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 48745083 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 48745142 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| ||||| || |||||| | ||||||| |||| | Sbjct 48745143 TGGTCGAGCGCTTGTTGTAGTGAGCCAGGCGCGACGCCTCGCCGGCGATGCGTTCGAAGA 48745202 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 48745203 TGTCGTTGACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 48745262 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 48745263 GCACCTGCTTCAGCACCTTGTA 48745284 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 48828501 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 48828442 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 48828441 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 48828382 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 48828381 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 48828322 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 48828321 GCACCTGCTTCAGCACCTTGTA 48828300 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 48855654 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 48855713 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| | | ||||| || | | Sbjct 48855714 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGTGACGCCTCGCCGGCAATGCGCTCAAAGA 48855773 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 48855774 TGTCGTTGACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 48855833 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 48855834 GCACCTGCTTCAGCACCTTGTA 48855855 Score = 152 bits (168), Expect = 6e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| || |||||||| || | || Sbjct 15761129 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTTTGGATCTCCCGTGAAGTGA 15761188 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||| || | | Sbjct 15761189 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCACCCGCAATGCGCTCAAAGA 15761248 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| |||||| | Sbjct 15761249 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGAT 15761308 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 15761309 GGACCTGCTTCAGCACCTTGTAGA 15761332 >seq1826 Length=106441 Score = 95.1 bits (104), Expect = 1e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 507105 AGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 507164 ||||| | |||||||||||||| | | ||||| || ||||| |||||||| ||| Sbjct 22429 AGCGGCTGAAGGGCAAGGAGGGCCGCGTGCGCGGGAACCTGATGGGGAAGCGCGTGGACT 22370 Query 507165 TTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGC 507224 | | || ||| ||||||||| |||||||||| | ||| ||| ||| |||||||||| | Sbjct 22369 TCTCGGCCCGCACCGTCATCACCCCCGACCCCAACCTCGCCATCGACCAGGTGGGCGTCC 22310 Query 507225 CC 507226 || Sbjct 22309 CC 22308 >seq3 Length=112045409 Score = 93.3 bits (102), Expect = 5e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| |||||||||||||| ||||||||| ||| | | || Sbjct 97249972 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCCGCCAGATGTCGTG 97249913 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||| | ||| ||||| |||||| || |||| ||| ||||| Sbjct 97249912 GTACTGGATGGGGAAAATGACGAAGCGCCGGGGGTTCTCCCGCAGCAGCGGTTC 97249859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106936828491722