Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 223 5e-52 seq848 120 5e-21 seq3 100 5e-15 seq1826 98.7 2e-14 >seq1 Length=194437802 Score = 223 bits (246), Expect = 5e-52 Identities = 203/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48841645 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48841586 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48841585 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48841526 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||||||||||||||||| Sbjct 48841525 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCA 48841466 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48841465 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48841406 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 48841405 ACACGTAGATCGAGTA 48841390 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48745044 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48745103 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48745104 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48745163 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| |||||| | ||||||| |||| |||||||||||||||||||||| Sbjct 48745164 GAGCCAGGCGCGACGCCTCGCCGGCGATGCGTTCGAAGATGTCGTTGACAAACGAGTTCA 48745223 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48745224 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48745283 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 48745284 ACACGTAGATCGAGTA 48745299 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48776436 TGTATTTGGTGACTGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48776377 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48776376 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48776317 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||||||||||||||||| Sbjct 48776316 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGTTCGAAGATGTCGTTGACAAACGAGTTCA 48776257 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48776256 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48776197 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 48776196 ACACGTAGATCGAGTA 48776181 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48828540 TGTATTTGGTGACCGCCTTGGTGCCCTCAGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48828481 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48828480 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48828421 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| |||||||||| Sbjct 48828420 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 48828361 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48828360 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48828301 Query 1485710 AAAC 1485713 | || Sbjct 48828300 ACAC 48828297 Score = 210 bits (232), Expect = 3e-48 Identities = 200/256 (78%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| || ||| ||||||| |||||| ||| Sbjct 48855615 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCATGCTTGGCCAGCTCGCCGGGCA 48855674 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48855675 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48855734 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | | ||||| || | |||||||||||||||||||||| Sbjct 48855735 GCGCCAGGCGTGACGCCTCGCCGGCAATGCGCTCAAAGATGTCGTTGACAAACGAGTTCA 48855794 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 48855795 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 48855854 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 48855855 ACACGTAGATCGAGTA 48855870 Score = 205 bits (226), Expect = 1e-46 Identities = 199/256 (78%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 15761090 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 15761149 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| || |||||||| || | ||| ||| ||||||||| | Sbjct 15761150 GCAGCAGGCGCACGGCCGTTTGGATCTCCCGTGAAGTGATGGTGGAGCGCTTGTTGTAGT 15761209 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||| || | |||||||||||||| ||||||| Sbjct 15761210 GCGCCAGGCGCGAGGCCTCACCCGCAATGCGCTCAAAGATGTCGTTGACAAAGGAGTTCA 15761269 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||| || |||||||| |||||||||| Sbjct 15761270 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGATGGACCTGCTTCAGCACCTTGT 15761329 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 15761330 AGACATAGATGGAGTA 15761345 Score = 123 bits (136), Expect = 4e-22 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 48761549 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 48761490 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48761489 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48761430 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCG 1485620 |||||||||| |||||| | ||||||| Sbjct 48761429 GCGCCAGGCGCGACGCCTCGCCGGCGATGCG 48761399 Score = 114 bits (126), Expect = 2e-19 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 48769675 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCTCCGGGCA 48769734 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| || ||||||||| | Sbjct 48769735 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 48769794 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGAT 1485617 |||||||||| |||||| | |||| Sbjct 48769795 GCGCCAGGCGCGACGCCTCGCCGGCGAT 48769822 >seq848 Length=1166004 Score = 120 bits (132), Expect = 5e-21 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || || ||||| ||| ||||||| || ||| ||| Sbjct 180145 TGTACTTGGTGACAGCCTTGGTGCCTTCAGACACGGCATGCTTGGCCAGCTCACCGGGCA 180086 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||| | ||| ||| || || || ||| | ||| || | Sbjct 180085 GCAGGAGCCGCACGGCCGTCTGCACCTCCCGGCTGGTGAGGGTTGAGCGGTGGTT-GTAC 180027 Query 1485590 -GCGCCAGGCGGCCGGCCT-CGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 || ||||||| |||| | |||| | || || | ||||| |||||||| ||||| Sbjct 180026 TGCACCAGGCGCGATGCCTCCACTGCC-AGCCGCTCAAAGATGTCATTGACAAATGAGTT 179968 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 |||||| ||| | ||| |||||| || ||| |||||||||||| Sbjct 179967 CATGATGCTCATGGCCTTGGAGGAGATACCTGTGTCAGGGTGCACCTGC 179919 >seq3 Length=112045409 Score = 100 bits (110), Expect = 5e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||||||||| ||||||||| ||| || ||| Sbjct 97249971 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCCGCCAGATGTCGTGG 97249912 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || ||||| ||||||||| || |||||||| || Sbjct 97249911 TACTGGATGGGGAAAATGACGAAGCGCCGGGGGTTCTCCCGCAGCAGCGGTTC 97249859 >seq1826 Length=106441 Score = 98.7 bits (108), Expect = 2e-14 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 429061 AGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 429120 |||| | ||||||||||||||||| | ||||| || ||||| |||||||| ||| Sbjct 22429 AGCGGCTGAAGGGCAAGGAGGGCCGCGTGCGCGGGAACCTGATGGGGAAGCGCGTGGACT 22370 Query 429121 TTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGC 429180 | |||| ||| ||||||||| ||||||||| | ||| ||| ||| |||||||||| | Sbjct 22369 TCTCGGCCCGCACCGTCATCACCCCCGACCCCAACCTCGCCATCGACCAGGTGGGCGTCC 22310 Query 429181 CC 429182 || Sbjct 22309 CC 22308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915984080332574