Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq28 111 1e-18 seq5 111 1e-18 >seq28 Length=6529417 Score = 111 bits (122), Expect = 1e-18 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| || | ||||||||| || || ||||| ||||||| || ||| Sbjct 3223855 TTCTTGTCCAGACCATAAGCTATAGCAGCAGCTGTCGGCTCATTGATAATTCGCAGTACA 3223796 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| |||| |||||||| ||||| || | || || ||||||||||| Sbjct 3223795 TTGAGCCCTGCAATGGTTCCAGCATCTTTTGTGGCCTGCCGCTGGGAGTCGTTAAAATAG 3223736 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || ||||| | || |||| ||||| Sbjct 3223735 GCTGGTACAGTGACTACAGCATTAGTTAC 3223707 >seq5 Length=97484820 Score = 111 bits (122), Expect = 1e-18 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | |||||||| ||||| || |||||| | ||| | || | ||||| Sbjct 39675915 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGAATGGTTAT 39675974 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 39675975 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGAAGAGCTGGTCG 39676034 Query 131296 TGATGG 131301 |||||| Sbjct 39676035 TGATGG 39676040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740509329821316