Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq23 183 6e-41 seq19 158 2e-33 seq3 127 4e-24 >seq23 Length=10219231 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| ||||| ||||| || | ||| ||||| || || ||||| || || || |||| Sbjct 6724580 TACCTCCCCTCAAGCGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 6724521 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| ||||| || ||||||||||| || || || ||||| |||| Sbjct 6724520 ACAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAG 6724461 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| || || ||||||||||| || ||| | || || | Sbjct 6724460 GAATGCCTTCCTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAA 6724401 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 6724400 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6724352 >seq19 Length=13198683 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||||| | || ||||| || || ||||| || || || ||||| Sbjct 4747649 CCACCCCTCAGGCGCAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4747590 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || ||||||||||| || || || ||||| || || Sbjct 4747589 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 4747530 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||| || || |||||| | ||||| || Sbjct 4747529 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCACC 4747470 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| || | ||||| || || |||||||| Sbjct 4747469 TCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4747423 Score = 107 bits (118), Expect = 4e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || || ||||||||||| || || || ||||| || || || || ||||| || || Sbjct 4747799 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 4747740 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || || || || ||||| |||||| | || || || |||| || || |||||| Sbjct 4747739 ATCTTGGCCTTCACGTTCTCAATGGTATCACTGGGCTCGACCTCCAGTGTGATGGTCTTG 4747680 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||||| ||||| |||||||| Sbjct 4747679 CCAGTGAGGGTCTTCACAAAGATCTGCAT 4747651 >seq3 Length=112045409 Score = 127 bits (140), Expect = 4e-24 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | || ||||| || |||||| ||||||| ||||| ||||| Sbjct 79418367 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACCTAGATACAGTGTTCTTCATC 79418426 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || || || || |||||||| | || || ||||| ||||| || ||||| Sbjct 79418427 CTGAGGAAGAAATTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 79418486 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 ||||| | ||| | || ||||| ||| |||| || || |||| Sbjct 79418487 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 79418529 Score = 109 bits (120), Expect = 1e-18 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||| ||||| ||||||||| ||||||| || || |||||||||||||| | |||||||| Sbjct 79420282 AGCTTTTTTTGGAGCTCAGATGAATTCATTTATTCATGTTATTATGTACATGTATTATGG 79420341 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 | || || ||||| |||| || | || ||| | ||||||||||| || | ||||| Sbjct 79420342 ATTAGCTGCCTGTGGCCCTAAAGTTCAGAAATATCTGTGGTGGAAGCGATACTTGACTAT 79420401 Query 60430 AATGCAATTGTTA 60442 | |||||||| || Sbjct 79420402 ATTGCAATTGGTA 79420414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981796178555974