Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq19 123 2e-23 seq23 118 1e-21 seq1 109 5e-19 >seq19 Length=13198683 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 4747619 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 4747560 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| |||||| || || || |||||||||||||| |||||| |||| Sbjct 4747559 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 4747500 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | || || |||| ||||| || | ||||| ||| ||||| || || || Sbjct 4747499 ACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTC 4747440 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 4747439 TTCACGAAGATCTGCATG 4747422 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||||||||| || | || |||| |||||| ||||| || ||||| |||||||| | Sbjct 4747799 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 4747740 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||||| ||| | | ||||| || || ||||||| || || | |||| ||| ||| Sbjct 4747739 ATCTTGGCCTTCACGTTCTCAATGGTATCACTGGGCTCGACCTCCAGTGTGATGGTCTTG 4747680 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || || || ||||||||| Sbjct 4747679 CCAGTGAGGGTCTTCACAAAGATCTGCATG 4747650 >seq23 Length=10219231 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || || ||| | | | || || || |||||||| Sbjct 6724548 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGTTGCTTGCC 6724490 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct 6724489 AGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGAATCTTGGCCTT 6724430 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 6724429 CACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 6724370 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 6724369 CTTCACAAAGATCTGCATG 6724351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 133545 TCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTG 133604 |||||||| |||||||||||||| |||||| ||| | | ||||| ||||| || Sbjct 6724695 TCGGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTG 6724636 Query 133605 GGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || |||| ||||| ||| ||||| |||| || || || || || ||||| Sbjct 6724635 GGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 6724580 >seq1 Length=194437802 Score = 109 bits (120), Expect = 5e-19 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | ||||||||||||||||||||| |||| ||||| |||||| Sbjct 192641659 TACTCCACTATTTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 192641718 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||| |||||||| | ||| |||||||||||||| ||| ||| || ||| ||||| Sbjct 192641719 CTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTGCCGGTCTCCGTCTGCG 192641776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483405898553840