Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq2 123 8e-25 seq1 104 7e-19 seq32 98.7 3e-17 seq19 98.7 3e-17 >seq2 Length=147128157 Score = 123 bits (136), Expect = 8e-25 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 142115377 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 142115436 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 142115437 CCCGGGCTTCAGC 142115449 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 142094770 GGCTGAAGTAGCTCAGCTGGGAGAGAGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 142094829 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 142094830 CCCGGGCTTCAGC 142094842 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 146074968 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 146075027 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 146075028 CCCGGGCTTCAGC 146075040 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 146086993 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 146086934 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 146086933 CCCGGGCTTCAGC 146086921 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 146225934 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 146225993 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 146225994 CCCGGGCTTCAGC 146226006 Score = 80.6 bits (88), Expect = 8e-12 Identities = 64/76 (84%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGT-CCCTGGTTC 2824 ||||||||||||| ||| || |||||||||||||||| | || ||||| ||||||||| Sbjct 142121323 ATGGCTGAAGTAGTTCACCTGAGAGAGCATTAGACTGACAACCTGAAGGTCCCCTGGTTC 142121382 Query 2825 AACCCCGGGCTTCAGC 2840 || | |||||||||| Sbjct 142121383 AATTCTGGGCTTCAGC 142121398 >seq1 Length=194437802 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 143635618 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 143635559 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 143635558 CCGGGTTTCGGC 143635547 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 143727682 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 143727741 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 143727742 CCGGGTTTCGGC 143727753 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 144199757 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 144199816 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 144199817 CCGGGTTTCGGC 144199828 >seq32 Length=5069901 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3169015 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3168956 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3168955 CCGGGTTTCGGC 3168944 >seq19 Length=13198683 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 4743854 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 4743913 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4743914 CCGGGTTTCGGC 4743925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849172506570