Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 194 2e-43 seq1826 95.1 2e-13 seq3 89.7 7e-12 seq848 86.0 9e-11 >seq1 Length=194437802 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 48776196 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 48776249 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| | |||||| ||| Sbjct 48776250 GGCATCATGAACTCGTTTGTCAACGACATCTTCGAACGCATCGCCGGCGAGGCGTCGCGC 48776309 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 48776310 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 48776369 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| |||||| |||||||||||||||| Sbjct 48776370 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCGGTCTCCGAGGGCACCA 48776418 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 48841405 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 48841458 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| | |||||| ||| Sbjct 48841459 GGCATCATGAACTCGTTTGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 48841518 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 48841519 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 48841578 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| |||||| |||||||||||||||| Sbjct 48841579 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCGGTCTCCGAGGGCACCA 48841627 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 48745284 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 48745231 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| | |||||| ||| Sbjct 48745230 GGCATCATGAACTCGTTTGTCAACGACATCTTCGAACGCATCGCCGGCGAGGCGTCGCGC 48745171 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 48745170 CTGGCTCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 48745111 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| |||||| |||||||||||||||| Sbjct 48745110 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCGGTCTCCGAGGGCACCA 48745062 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 48828300 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 48828353 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 48828354 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 48828413 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 48828414 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 48828473 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| |||||| ||||| |||||||||| Sbjct 48828474 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCGGTCTCTGAGGGCACCA 48828522 Score = 179 bits (198), Expect = 5e-39 Identities = 187/244 (77%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| || ||| |||| |||| Sbjct 15761345 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCATCCCGACACCGG-----CATC- 15761292 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| ||||||||||| |||||||||||||| | || ||||| | Sbjct 15761291 TCCTCCAAGGCCATGGGCATCATGAACTCCTTTGTCAACGACATCTTTGAGCGCATTGCG 15761232 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 |||||| |||||||||| || |||||||||| ||| ||| | || |||||| Sbjct 15761231 GGTGAGGCCTCGCGCCTGGCGCACTACAACAAGCGCTCCACCATCACTTCACGGGAGATC 15761172 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 || || |||||||||||| | ||| |||||| ||||||| ||||||||||||||||||| Sbjct 15761171 CAAACGGCCGTGCGCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGC 15761112 Query 725139 ACCA 725142 |||| Sbjct 15761111 ACCA 15761108 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 48855855 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 48855802 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| | || ||||| | | |||||| ||| Sbjct 48855801 GGCATCATGAACTCGTTTGTCAACGACATCTTTGAGCGCATTGCCGGCGAGGCGTCACGC 48855742 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| |||| ||||||||||| |||||||| Sbjct 48855741 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 48855682 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||| || |||||||||||||||| Sbjct 48855681 CTGCTGCTGCCCGGCGAGCTGGCCAAGCATGCGGTCTCCGAGGGCACCA 48855633 Score = 118 bits (130), Expect = 2e-20 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 725010 CGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG 725069 ||||||| | |||||| |||||||||| || |||||||||| || ||| || Sbjct 48761399 CGCATCGCCGGCGAGGCGTCGCGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCG 48761458 Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 || ||||||||||| |||||||| ||| | ||| |||||| ||||||| |||||| ||| Sbjct 48761459 CGGGAGATCCAGACGGCCGTGCGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCGGTC 48761518 Query 725130 TCCGAGGGCACCA 725142 ||||||||||||| Sbjct 48761519 TCCGAGGGCACCA 48761531 Score = 109 bits (120), Expect = 8e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 725013 ATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC 725072 |||| | |||||| |||||||||| || |||||||||| || ||| |||| Sbjct 48769822 ATCGCCGGCGAGGCGTCGCGCCTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGG 48769763 Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 ||||||||||| |||||||| ||| | ||| ||| || ||||||| |||||| |||||| Sbjct 48769762 GAGATCCAGACGGCCGTGCGGCTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCGGTCTCC 48769703 Query 725133 GAGGGCACCA 725142 |||||||||| Sbjct 48769702 GAGGGCACCA 48769693 >seq1826 Length=106441 Score = 95.1 bits (104), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1818122 GGGCACGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGT 1818181 ||| |||||||||| ||| ||| | | | |||||||||| ||||||||| ||| || | Sbjct 22308 GGGGACGCCCACCTGGTCGATGGCGAGGTTGGGGTCGGGGGTGATGACGGTGCGGGCCGA 22367 Query 1818182 AAAGTTGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCG 1818241 |||| |||||||| ||||| || ||||| | | ||||||||||||||| | ||| Sbjct 22368 GAAGTCCACGCGCTTCCCCATCAGGTTCCCGCGCACGCGGCCCTCCTTGCCCTTCAGCCG 22427 Query 1818242 CT 1818243 || Sbjct 22428 CT 22429 >seq3 Length=112045409 Score = 89.7 bits (98), Expect = 7e-12 Identities = 89/114 (78%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 || ||||||||||| || ||||| ||||| ||| | |||||||||| ||||| Sbjct 97249859 GAACCGCTGCTGCGGGAGAACCCCCGGCGCTTCGTCATTTTCCCCATCCAGTACCACGAC 97249918 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| |||||| || ||||||||||||||||| ||||| || |||||||| Sbjct 97249919 ATCTGGCGGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 97249971 >seq848 Length=1166004 Score = 86.0 bits (94), Expect = 9e-11 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| ||||| ||||||||||| |||||||| ||||| | || || | || Sbjct 179943 CTCCTCCAAGGCCATGAGCATCATGAACTCATTTGTCAATGACATCTTTGAGCGGCT-GG 180001 Query 725018 CA-CCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 || ||||| ||||||| || | |||| | ||| || || || || ||| Sbjct 180002 CAGTGGAGGCATCGCGCCTGGTGCAGTACAACCACCGCTCAACCCTCACCAGCCGGGAGG 180061 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 | ||||| |||||||| || | ||| ||| || ||||||| ||| ||||| || || | Sbjct 180062 TGCAGACGGCCGTGCGGCTCCTGCTGCCCGGTGAGCTGGCCAAGCATGCCGTGTCTGAAG 180121 Query 725137 GCACCA 725142 |||||| Sbjct 180122 GCACCA 180127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177573349767492