Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 1e-10 seq1 82.4 1e-10 >seq2 Length=147128157 Score = 82.4 bits (90), Expect = 1e-10 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | |||||||||||| ||||| | || ||||| || |||| ||||| Sbjct 127698066 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 127698125 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| |||| | ||||| ||| ||||| || || |||||||| || || || ||||| Sbjct 127698126 TCAGCCAAAATATAGCAGCA-AATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAG 127698184 Query 122797 GCAA 122800 |||| Sbjct 127698185 GCAA 127698188 >seq1 Length=194437802 Score = 82.4 bits (90), Expect = 1e-10 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || ||||| | |||||||| || | ||| | || || ||||| Sbjct 192641643 CTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGATTGCTGCATTTGATGGTCCC 192641702 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 ||| |||| || || |||||| ||||||| | || ||||| |||||||| || || || Sbjct 192641703 CAAGTTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGTGTGCC 192641762 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||||||||| || | || || || | ||| Sbjct 192641763 GGTCTCCGTCTGCGACTCGATGATGGCGTACCA 192641795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628012640913600