Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq31 100 3e-16 seq2 87.8 2e-12 >seq31 Length=4768521 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||| || | ||||| ||||| ||||| ||| |||||||| Sbjct 3940445 GTGAAGATGTATCGCGGGCTCGCAGAGTCCTTCCCACCGTGCAGCCTCGTGCCAAACTGA 3940504 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| || |||||||||||||| |||||| || ||||||||||| || | Sbjct 3940505 CCGATGGGCTGCAGCAGGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCCAAGTTTATG 3940564 Query 152149 ATCGT 152153 ||||| Sbjct 3940565 ATCGT 3940569 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| || | ||| |||| ||||| ||||| || | ||| || || || Sbjct 3940445 GTGAAGATGTATCGCGGGCTCGCAGAGTCCTTCCCACCGTGCAGCCTCGTGCCAAACTGA 3940504 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| || ||||| |||||||| |||||||||||| ||||||||||| | Sbjct 3940505 CCGATGGGCTGCAGCAGGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCCAAGTTTATG 3940564 Query 117425 ATCGT 117429 ||||| Sbjct 3940565 ATCGT 3940569 >seq2 Length=147128157 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| || |||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 37827439 AGTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTG 37827498 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | || | | || || | ||||| || |||||||| |||||||||||||| Sbjct 37827499 ACCAATAGGTTGTAGAAGATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGAC 37827558 Query 117424 AATCGT 117429 ||| || Sbjct 37827559 AATAGT 37827564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547199132066800