Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq23 185 1e-41 seq19 149 7e-31 >seq23 Length=10219231 Score = 185 bits (204), Expect = 1e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 6724352 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 6724411 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| ||||||| || ||||| |||||||| || |||||||| || ||| Sbjct 6724412 GACACCATTGAAAATGTGAAGGCCAAGATTCAAGACAAGGAAGGCATTCCTCCCGATCAG 6724471 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| |||||||| || |||| || ||||| | ||||| || Sbjct 6724472 CAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACCCTGTCTGACTACAAC 6724531 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| ||||| |||||||| || || || |||| Sbjct 6724532 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCG 6724566 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | || |||||||| || || || ||||| ||| | || Sbjct 6724580 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 6724639 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || | ||||| || ||||||| || || || |||||||| || |||||||| || Sbjct 6724640 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGA 6724695 >seq19 Length=13198683 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || | ||||| || | || Sbjct 4747423 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAACCCAGT 4747482 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 4747483 GATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4747542 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || ||||| | ||||| || Sbjct 4747543 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 4747602 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| || |||| || | ||||| Sbjct 4747603 ATCCAGAAGGAGTCCACTCTCCATCTTGTTCTGCGCCTGAGGGGTGG 4747649 Score = 129 bits (142), Expect = 7e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||| ||| | || Sbjct 4747651 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACACTGGAGGTCGAGCCCAGT 4747710 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||||| || || |||||||||||||| ||||| || || ||| Sbjct 4747711 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAG 4747770 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 ||| | || || |||||||| ||||| || Sbjct 4747771 CAGAGGCTGATCTTTGCTGGCAAGCAGCT 4747799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570292820181920