Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq13 311 1e-79 seq2 87.8 2e-12 >seq13 Length=20192527 Score = 311 bits (344), Expect = 1e-79 Identities = 673/997 (68%), Gaps = 26/997 (3%) Strand=Plus/Minus Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGTG 13667 |||||| ||||||||||| |||||| |||| | | | || | || | | | Sbjct 4753515 GACTACCTGAACATGACGAAGGACTGCAGCAGCTTCAAGGAGAGCCGGCGCTACATTGAG 4753456 Query 13668 AGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCAC 13727 || |||||| ||| |||| ||| || |||||||||||||| || || ||||||||| Sbjct 4753455 TTCCCGCTGAGCGAGGAGGAGGCCGACTTCCCCATCGCCTACTCCATGGTCATCCACCAC 4753396 Query 13728 AAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGC 13787 |||||||||||||||||||| |||||| | | ||||||||||||||||| |||||||| Sbjct 4753395 AAGATCGAGATGTTCGAGCGGCTCCTGCGCTCTCTCTACGCCCCGCAGAACGTCTACTGC 4753336 Query 13788 GTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847 |||||||||||| ||| || || || ||| | || ||| |||||||||| Sbjct 4753335 GTCCACGTGGACAGCAAAGCCCCCGCCGCCTTCCAGCAGGCCGTGCGGGCCATCGCCGCC 4753276 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 |||||||| ||||| | ||||| ||| ||| | ||||||||||| ||||||| Sbjct 4753275 TGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAGAGCGTGGTGTACGCCTCCTGGTCC 4753216 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 || ||||||||||||||| ||||||| ||||||| |||||| ||| | Sbjct 4753215 CGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGCCCTGGCGC 4753156 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 ||| | |||||| ||||| | |||||||| ||||||||||| |||||| || || Sbjct 4753155 TACGTCCTCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCGGAGATGGTCCGT 4753096 Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA---ACCAC 14084 |||||| ||| ||| || ||||| | ||||| ||| | ||| | || Sbjct 4753095 GCGCTGCAGGTGCTGCAGGGGCAGAACAGCATGGAGTCGGAG---AAGCCGACGGCTTAC 4753039 Query 14085 AAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACC 14144 |||| | | ||| | | | ||| |||| ||| ||| | || || | Sbjct 4753038 AAGCAGGAGCGCTGGAAGTACCACCACCAAGTGG--AGC----ACGTCATCCTCCGCA-C 4752986 Query 14145 GGCAGGAACAAGGCC-CCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTT 14203 ||| | ||| ||| |||||||||||| ||||| || |||| | ||| ||| | Sbjct 4752985 GGCCACAGCAAAGCCGCCGCCGCCGCTCCCCTCGCCCATGTTCACGGGCAGCGCCTACAT 4752926 Query 14204 TGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC---T 14260 || | || |||| |||||| | ||| || ||| || || | ||| | || | Sbjct 4752925 CGCAGCGACGCGGGCCTTCGTGCAGCACGTGCT---GGAGGACCCCGCGGCGCAGCAGTT 4752869 Query 14261 CATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAG 14320 | | | ||| | ||||||| |||||||||||||||||| |||||||||| || | | Sbjct 4752868 CCTCGAGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTGTGGGCCACGCTGAACCG 4752809 Query 14321 AATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTG 14380 | ||| |||||| | | ||| ||| ||||| | | || |||||| Sbjct 4752808 CGCGCCCGGCGTGCCCGGCGCCGTGCCCCACAACGACAAGTTCCAGCTGTCCGACATGAA 4752749 Query 14381 GGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCT 14440 || | | | | ||||||||||| |||| || || || | || || || | Sbjct 4752748 CGCGCTGCCCCGCCTGGTCAAGTGGCAGTACTTGGACGGCGACACCAGCCGGGGAGCGCC 4752689 Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCA-CGC--CATCTGCATCTTCGGGTCCGGCGA 14497 |||||||| ||| ||| || | |||| ||| | ||||||||| ||||||||| || Sbjct 4752688 CTACCCGCCCTGCACCGG---CCGCTTCCAGCGCAGCGTCTGCATCTACGGGTCCGGGGA 4752632 Query 14498 CGTGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGA 14557 ||| ||| || | | | ||||| || ||||||||||||||| ||| || Sbjct 4752631 TGTGGCCTGGATGCTGCGGCAGCACCACCTCTTGGCCAACAAGTTCGACACCGAAGTAGA 4752572 Query 14558 CGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 ||| |||| | | ||||| || || || ||||| Sbjct 4752571 CGACGCCGCCATCCAGTGTCTCGAGAAGCACCTGCGC 4752535 >seq2 Length=147128157 Score = 87.8 bits (96), Expect = 2e-12 Identities = 229/339 (68%), Gaps = 24/339 (7%) Strand=Plus/Minus Query 13695 TTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATGTTCGAGCGCCTC 13751 |||||| | |||||| ||| | | || |||||| | |||| || ||||| ||| Sbjct 61107804 TTTCCCCTGGCCTAC---ATCATCACCCTGCACAAGGAGTTTGAGACCTTTGAGCGGCTC 61107748 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTC--CG 13809 | ||||| ||||| || ||||| |||||||| |||||||||| |||| | || Sbjct 61107747 TTCAGGGCAGTCTACATGCCCCAGAATGTCTACTGCATCCACGTGGATGGCAAGGCACCG 61107688 Query 13810 GCGACGAGTT-CATCCGGGGCGTCTCGGCCATCGCCAGG-TGCTTCCCTAACGTGGCCCT 13867 || || || || | | ||| |||| || || |||||||| || | ||| Sbjct 61107687 GC--CGCCTTGCAGC--GAGCGGTGCGGCACCTGCTGGGCTGCTTCCCCAATGCCTTCCT 61107632 Query 13868 GGCC-CACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT----CGCGTGCAGGCCGAC 13922 ||| | | | | || ||||| || || ||| || ||| ||||||||||| Sbjct 61107631 CGCCTCTCACACAGAGCGG-GTGGTCTATGG----TGGTGTGTCCCGCCTGCAGGCCGAC 61107577 Query 13923 CTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTG 13982 || ||||||| |||||||| ||||| |||| ||| | ||||||||||| Sbjct 61107576 CTGCACTGCATGAGGGACCTGGTGGCCTCTGCCGTGCCCTGGCGCTACCTGCTCAATGCC 61107517 Query 13983 TGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATC 14021 |||||| ||||||||| | |||||||| | ||||||| Sbjct 61107516 TGCGGGCAGGACTTCCCCTTGAAGACCAATCGGGAGATC 61107478 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 ||| ||||||||||||| ||||||| |||||||| ||||| |||| ||| | Sbjct 61112425 CGCCTGCAGGCCGACCTGCACTGCATGAGGGACCTGGTGGCCTCTGCCGTGCCCTGGCGC 61112366 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATC 14021 ||||||||||| |||||| ||||||||| | |||||||| | ||||||| Sbjct 61112365 TACCTGCTCAATGCCTGCGGGCAGGACTTCCCCTTGAAGACCAATCGGGAGATC 61112312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658718894364160