Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 seq3 89.7 4e-13 >seq2 Length=147128157 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 |||||| || | || ||||||||||| ||||| || || || || ||||| ||||| | Sbjct 127698054 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCA 127698113 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 || ||||| || |||||||||||||| |||||||| || |||||||| |||||||| | Sbjct 127698114 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 127698173 Query 4678 CGGCGGCAAACGCTAC 4693 | || ||||| || || Sbjct 127698174 CTGCAGCAAAGGCAAC 127698189 Score = 100 bits (110), Expect = 2e-16 Identities = 98/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 4927 TTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985 ||||| || | |||||| ||||| || || |||||||||||||| || || | ||||||| Sbjct 127702532 TTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAGAAGGCGAGAACATGA 127702591 Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045 || |||||||||| ||| || | || || || |||||||| || | || || | |||| Sbjct 127702592 GAGATAAAGTACTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTGATAAA 127702651 Query 5046 TCAAC 5050 ||||| Sbjct 127702652 TCAAC 127702656 >seq3 Length=112045409 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || || ||||||||||| |||||||||||||| || || Sbjct 97250738 TCTTTAATGTACGTGTCAATGAGAAGACTATACATTTCTGAATGTATATTTTCCATGGCT 97250679 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| || || || || || | |||||||| | ||| ||||| Sbjct 97250678 ATCTGGAAGCCATAGAAACAACGCGCTTCTGTGATTTGCACTTC 97250635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427036765291178