Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 seq1 91.5 2e-13 seq2 84.2 3e-11 >seq3 Length=112045409 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| |||||||| ||||| || ||||||| || | ||| || Sbjct 97252389 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGCCCAGGCATTAAGCCTCTTTTCTTC 97252330 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||| |||||||| ||||| || || |||||||| Sbjct 97252329 AGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAATATTCCTTCCACTGCTGCAAATGC 97252271 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| ||| || || || | ||||||||||||||| || || |||||||| || || Sbjct 97250739 ATCTTTAATGTACGTGTCAATGAGAAGACTATACATTTCTGAATGTATATTTTCCATGGC 97250680 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | |||||||||||| || || || Sbjct 97250679 TATCTGGAAGCCATAGAAACAACGCGCTTCTGTGATTTGCACTTC 97250635 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || ||||| || |||||| Sbjct 97253690 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 97253631 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| || || || ||||| |||||||| ||||| Sbjct 97253630 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 97253596 >seq1 Length=194437802 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || |||||||| || || || | ||| Sbjct 192636932 TGAAACTCTCCCGAAAGGACTCTGCGCGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 192636991 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || ||||| |||| || |||||||| |||||||||||||| || | | | | || Sbjct 192636992 TCGTTGTTGCCCAGGATCTGAGCAGTGGAAGCAGTTGGCATGGGGGAAAGGAGAAGGCTG 192637051 Query 77247 TTTCTGAGACCAT 77259 ||||||| ||||| Sbjct 192637052 TTTCTGACACCAT 192637064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || ||||| || || | || || || || || |||||||| | ||||| || |||||| Sbjct 192645300 GTGCCTGCGTTGAACAGCGTGGGCGAGGCGTGGGTAAACCACCTCTCAGACAGAAGATTG 192645359 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || ||||| || || ||||| ||||| || | ||||| | Sbjct 192645360 TAAGTTTCAATGGCAGCCTCGATGTCAGTTTTGTGGATTCCCACCGCCACCCTCATCAGC 192645419 Query 78519 ATATGCTGAGG 78529 ||||||||||| Sbjct 192645420 ATATGCTGAGG 192645430 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 ||||| ||||||||||||||||| ||||| || || | || || |||| || | || Sbjct 192642976 AACTCTCTTCATAAAGAGATCAGGAATCCAGAGGGCGAAGAAAAGGTCTCTGGCACGCTG 192643035 Query 78062 TTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 ||||| || || || ||||| |||||| || |||||||| | || || ||||| | Sbjct 192643036 CTCTTCCTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAGGTGCCACG 192643094 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTC 78150 |||| || || || || | | | ||||||| Sbjct 192643095 GTTCCAGGTAGATGGCAAAAGCCCCAGGTC 192643124 >seq2 Length=147128157 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || | || ||||| || || | || || Sbjct 127698068 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 127698127 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 127698128 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 127698186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694647386834240