Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Numida_20meleagris_20[refseq_20GCF_5F002078875.1_202017-06-01] 2,466 sequences; 1,043,264,150 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq19 149 5e-31 seq23 136 3e-27 >seq19 Length=13198683 Score = 149 bits (164), Expect = 5e-31 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || || || || || ||| |||||| ||||||||||| || Sbjct 4747653 CATGCCACCCCTCAGGCGCAGAACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 4747594 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| |||| ||||||||||| || |||||||||| | ||||||||| | Sbjct 4747593 AGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 4747534 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||| | | | ||||| || || ||| Sbjct 4747533 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTC 4747474 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||||||| || || ||||| || |||||||||||||||||||| |||||| || Sbjct 4747473 CACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGTTG 4747419 Score = 95.1 bits (104), Expect = 9e-15 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| | ||||||||| | || | || ||||| ||| Sbjct 4747799 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 4747740 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| |||| | ||||| || || || ||||||| || || ||||| Sbjct 4747739 ATCTTGGCCTTCAC-GTTCTCAATGGTATCACTGGGCTCGACCTCCAGTGTGATGGTCTT 4747681 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||||||||||||| ||||| |||||| Sbjct 4747680 GCCAGTGAGGGTCTTCACAAAGATCTGCATG 4747650 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||||||||| || ||| |||||| ||||||||||| |||| Sbjct 4748117 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4748058 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGAT 44208 || |||| | || ||||||||||| || |||||||| Sbjct 4748057 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGAT 4748020 >seq23 Length=10219231 Score = 136 bits (150), Expect = 3e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || |||| | || ||||||||| || ||| |||||| ||||||||||| Sbjct 6724585 TTGCATACCTCCCCTCAAGCGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTA 6724526 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || ||| | || ||||| ||||| || |||||||||| | ||||||||| Sbjct 6724525 GTCAGACAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATC 6724466 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | |||||||| || ||||| ||||| || | |||||||| || Sbjct 6724465 GGGAGGAATGCCTTCCTTGTCTTGAATCTTGGCCTTCACATTTTCAATGGTGTCACTGGG 6724406 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 6724405 CTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 6724351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359979580713522